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Sample GSM52460 Query DataSets for GSM52460
Status Public on Jun 03, 2005
Title trimethylated K4 histone 3 in HeLa cell, 30 minute - rep1 of 3
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using trimethyl-H3K4 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of trimethyl-H3K4 binding using RenLab ENCODE PCR tiling array. Array ID is ENC473. Replicate 1 of 3.
 
Submission date May 25, 2005
Last update date Jun 24, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE2730 ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells

Data table header descriptions
ID_REF
VALUE log2 ratio
STATISTICS X-statistics
P-VAL p-value calculated using single array error model
F635_INT normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN F635 median intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation

Data table
ID_REF VALUE STATISTICS P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD
1 0.055891 2.19828687e-02 3.71223852e-01 705.84796 679.02599 1048 1044 269 54 61 41 925 921 187 155 158 50
2 0.039472 1.53979152e-02 4.08976854e-01 836.58181 814.00339 1215 1199 362 57 63 42 1050 1037 239 154 155 44
3 0.006591 2.60600885e-03 4.84462634e-01 1937.69457 1928.86265 2652 2602 654 54 60 42 2224 2140 542 149 152 46
4 0.123547 4.74539468e-02 2.39047044e-01 816.36082 749.36042 1193 1192 386 57 65 42 998 982 276 156 159 51
5 -0.375756 -1.04607946e-01 9.41061276e-01 968.97626 1257.26554 1321 1305 442 56 63 42 1239 1467 1942 153 157 49
6 0.062716 2.45763579e-02 3.56666756e-01 843.94850 808.04685 1201 1212 325 58 66 45 1044 1029 250 152 153 45
7 0.143176 5.26674843e-02 2.15551224e-01 437.57299 396.23256 638 671 279 60 66 43 620 617 191 156 158 47
8 -0.083872 -3.29603638e-02 6.88892006e-01 1124.90804 1192.24384 1584 1525 443 61 67 43 1460 1397 329 154 158 57
9 0.020552 7.74090060e-03 4.53938881e-01 424.44479 418.44115 634 654 218 57 65 47 621 651 206 156 157 49
10 0.033468 1.25223470e-02 4.25755095e-01 266.47001 260.35951 324 324 147 59 66 42 365 370 129 150 151 46
11 -0.054763 -2.06322079e-02 6.21119820e-01 665.28674 691.02543 927 984 391 60 77 149 892 933 280 154 164 117
12 -0.061747 -2.48056739e-02 6.44610751e-01 2281.44252 2381.20736 3093 3084 587 64 76 86 2646 2602 413 155 165 82
13 -0.010843 -4.32496750e-03 5.25774588e-01 962.86878 970.13295 1300 1334 295 58 65 43 1187 1185 209 157 158 47
14 0.360541 1.37495041e-01 1.99220285e-02 1068.06110 831.88341 1536 1524 473 57 66 47 1077 1054 296 154 157 46
15 0.251204 9.01678403e-02 8.88476333e-02 465.78016 391.34622 727 713 315 59 65 43 633 609 222 156 156 45
16 0.217184 8.19334742e-02 1.10326636e-01 928.10595 798.39665 1383 1342 482 62 66 42 1110 1023 340 155 157 45
17 -0.013770 -5.52647355e-03 5.32920442e-01 1274.54394 1286.76708 1651 1724 343 62 67 43 1505 1501 225 160 162 48
18 0.119183 3.59934608e-02 2.95270303e-01 415.17937 382.25941 615 634 220 62 68 45 530 597 574 156 158 47
19 0.075745 2.99455657e-02 3.27204687e-01 1944.38515 1844.93343 2692 2630 686 62 68 45 2121 2065 462 153 156 44
20 0.141528 5.49652782e-02 2.05636527e-01 1057.73513 958.89887 1465 1473 453 63 72 71 1196 1175 305 157 187 483

Total number of rows: 25392

Table truncated, full table size 2758 Kbytes.




Supplementary file Size Download File type/resource
GSM52460.gpr.gz 2.1 Mb (ftp)(http) GPR
GSM52460_532.tif.gz 53.0 Mb (ftp)(http) TIFF
GSM52460_635.tif.gz 51.0 Mb (ftp)(http) TIFF

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