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Sample GSM5272 Query DataSets for GSM5272
Status Public on Apr 18, 2003
Title 4mM H2O2:ctrl (1h)
Sample type RNA
 
Channel 1
Source name H2O2
Organism Mycobacterium tuberculosis
Extracted molecule total RNA
 
Channel 2
Source name control
Organism Mycobacterium tuberculosis
Extracted molecule total RNA
 
 
Description H37Rv treated for 1h with 4mM H2O2 in 7H9/ADC/Tween at OD650 = 0.3 versus control untreated cells
Sample_array_print_batch: Mtaa-03
Sample_image_analysis_software: Axon GenePix Pro
Sample_image_analysis_software_version: 3.0.6.66
Sample_microarray_scanner: GenePix 4000B [82425]
Sample_NIH_mAdb_system_expt_id: 24080
Sample_organism_strain: H37Rv
Sample_treatment_agent: hydrogen peroxide
Sample_treatment_dose: 4
Sample_treatment_dose_unit: mM
Sample_treatment_timepoint: 1
Sample_treatment_timepoint_unit: h
Sample_treatment_vehicle: None
Keywords = DNA damage
 
Submission date Mar 31, 2003
Last update date Nov 21, 2005
Contact name Helena I Boshoff
E-mail(s) hboshoff@niaid.nih.gov
Phone 301-451-9438
Fax 301-402-0993
Organization name NIAID/ NIH
Department LIG
Lab Tuberculosis Research Section
Street address 12441 Parklawn Drive
City Rockville
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL280
Series (1)
GSE365 DNA repair in Mycobacterium tuberculosis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
1010081 -0.0457573 6 1 1 140 47 80 32 247 45 58 14 0 0.900 -0.0457573
1010082 -0.2716463 8 1 1 107 42 70 27 248 40 52 14 0 0.535 -0.2716463
1010083 0.0979513 6 2 1 188 61 81 32 300 72 58 15 0 1.253 0.0979513
1010084 -0.0177293 8 2 1 113 43 71 27 175 38 51 13 0 0.960 -0.0177293
1010085 -0.1542823 6 3 1 201 56 77 32 557 74 56 14 0 0.701 -0.1542823
1010086 0.0937723 8 3 1 203 74 69 27 357 51 51 12 0 1.241 0.0937723
1010087 0.0813473 6 4 1 240 65 74 31 443 67 53 15 0 1.206 0.0813473
1010088 -0.1706963 8 4 1 292 83 69 27 987 85 51 12 0 0.675 -0.1706963
1010089 0.1746413 6 5 1 119 48 71 30 142 28 51 16 0 1.495 0.1746413
1010090 -0.0762383 8 5 1 149 49 70 26 318 55 51 16 0 0.839 -0.0762383
1010091 0.3203543 6 6 1 261 601 78 36 304 356 56 45 0 2.091 0.3203543
1010092 0.1981073 8 6 1 124 49 70 30 150 42 53 18 0 1.578 0.1981073
1010093 0.0211893 14 1 1 150 53 77 32 258 100 61 17 0 1.050 0.0211893
1010094 0.3682873 16 1 1 235 95 90 57 249 66 73 38 0 2.335 0.3682873
1010095 0.2667023 14 2 1 196 64 76 33 246 79 62 21 0 1.848 0.2667023
1010096 0.0141003 16 2 1 212 65 80 31 431 83 69 29 0 1.033 0.0141003
1010097 0.0077483 14 3 1 160 67 77 33 294 86 63 20 0 1.018 0.0077483
1010098 -0.7144433 16 3 1 331 82 77 70 3798 497 70 122 0 0.193 -0.7144433
1010099 0.0220163 14 4 1 352 109 77 30 804 201 63 50 0 1.052 0.0220163
1010100 0.1479853 16 4 1 14699 2446 77 71 29555 3726 70 151 0 1.406 0.1479853

Total number of rows: 4320

Table truncated, full table size 301 Kbytes.




Supplementary data files not provided
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