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Sample GSM5273 Query DataSets for GSM5273
Status Public on Apr 18, 2003
Title 4mM H2O2:ctrl (2h)
Sample type RNA
 
Channel 1
Source name H2O2
Organism Mycobacterium tuberculosis
Extracted molecule total RNA
 
Channel 2
Source name control
Organism Mycobacterium tuberculosis
Extracted molecule total RNA
 
 
Description H37Rv treated for 2h with 4mM H2O2 in 7H9/ADC/Tween at OD650 = 0.3 versus control untreated cells
Sample_array_print_batch: Mtaa-03
Sample_image_analysis_software: Axon GenePix Pro
Sample_image_analysis_software_version: 3.0.6.66
Sample_microarray_scanner: GenePix 4000B [82425]
Sample_NIH_mAdb_system_expt_id: 24081
Sample_organism_strain: H37Rv
Sample_treatment_agent: hydrogen peroxide
Sample_treatment_dose: 4
Sample_treatment_dose_unit: mM
Sample_treatment_timepoint: 2
Sample_treatment_timepoint_unit: h
Sample_treatment_vehicle: None
Keywords = DNA damage
 
Submission date Mar 31, 2003
Last update date Nov 21, 2005
Contact name Helena I Boshoff
E-mail(s) hboshoff@niaid.nih.gov
Phone 301-451-9438
Fax 301-402-0993
Organization name NIAID/ NIH
Department LIG
Lab Tuberculosis Research Section
Street address 12441 Parklawn Drive
City Rockville
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL280
Series (1)
GSE365 DNA repair in Mycobacterium tuberculosis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
1010081 -0.0721173 6 1 1 417 90 111 39 537 77 81 14 0 0.847 -0.0721173
1010082 -0.1209043 8 1 1 349 108 130 45 452 137 87 22 0 0.757 -0.1209043
1010083 0.0674433 6 2 1 1040 199 112 38 1085 197 82 13 0 1.168 0.0674433
1010084 0.0595633 8 2 1 315 76 126 44 294 39 86 24 0 1.147 0.0595633
1010085 -0.0685423 6 3 1 830 316 116 39 1137 433 82 13 0 0.854 -0.0685423
1010086 0.1643533 8 3 1 1217 487 129 42 1029 413 88 15 0 1.460 0.1643533
1010087 0.0338263 6 4 1 782 226 116 38 860 215 82 13 0 1.081 0.0338263
1010088 0.1185953 8 4 1 1424 465 127 45 1332 437 86 15 0 1.314 0.1185953
1010089 0.1408223 6 5 1 311 71 116 40 260 36 82 14 0 1.383 0.1408223
1010090 0.0989903 8 5 1 526 106 121 43 491 68 84 25 0 1.256 0.0989903
1010091 0.1010593 6 6 1 420 142 120 40 381 111 81 14 0 1.262 0.1010593
1010092 0.2875783 8 6 1 534 184 124 44 352 110 85 24 0 1.939 0.2875783
1010093 0.1068713 14 1 1 259 69 109 37 227 44 79 14 0 1.279 0.1068713
1010094 0.2185363 16 1 1 529 103 132 48 390 53 87 19 0 1.654 0.2185363
1010095 0.2229763 14 2 1 292 81 108 39 217 38 78 22 0 1.671 0.2229763
1010096 0.0382233 16 2 1 627 163 127 104 665 150 87 55 0 1.092 0.0382233
1010097 -0.0746883 14 3 1 222 62 110 40 247 49 79 17 0 0.842 -0.0746883
1010098 -0.4056073 16 3 1 2048 362 131 194 6239 1055 88 93 0 0.393 -0.4056073
1010099 0.0174513 14 4 1 1124 298 111 45 1308 357 80 54 0 1.041 0.0174513
1010100 0.0580463 16 4 1 32431 5081 134 179 35762 5265 91 202 0 1.143 0.0580463

Total number of rows: 4320

Table truncated, full table size 310 Kbytes.




Supplementary data files not provided
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