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Status
Public on May 01, 2010
Title
control-7-PAEC
Sample type
genomic
Source name
airway endothelial cells cultured from subject control-7
Organism
Homo sapiens Characteristics
disease state: Control (non-diseased subject)
Treatment protocol
none
Growth protocol
as reported in Xu, W., Koeck, T., Lara, A. R., Neumann, D., DiFilippo, F. P., Koo, M., Janocha, A. J., Masri, F. A., Arroliga, A. C., Jennings, C. et al. (2007) Proc. Natl. Acad. Sci. U. S. A 104, 1342-1347.
Extracted molecule
genomic DNA
Extraction protocol
Qiagen DNA mini
Label
C-Bio and A-DNP
Label protocol
standard Illumina
Hybridization protocol
standard Illumina
Scan protocol
standard Illumina
Data processing
standard Illumina
Submission date
Mar 29, 2010
Last update date
Mar 30, 2010
Contact name
Christopher D Coldren
E-mail(s)
Chris.Coldren@ucdenver.edu Phone
303 724 6056
Organization name
University of Colorado School of Medicine
Department
Medicine
Lab
Pulmonary Sciences and Critical Care Medicine
Street address
12700 East 17th Place
City
Aurora
State/province
CO
ZIP/Postal code
80045
Country
USA
Platform ID
GPL8887 Series (1)
GSE21097 Acquired chromosome abnormalities in the lungs of patients with Pulmonary Arterial Hypertension (Illumina)
Data table header descriptions ID_REF VALUE genotype call
Log R ratio B allele freqeuncy
Data table ID_REF VALUE Log R ratio B allele freqeuncy 200003
AA
0.0919781
0.011143
200006
BB
-0.0863443
0.999774
200047
AA
0.146804
0.0750104
200050
BB
0.0452381
0.995397
200052
BB
0.118101
0.987933
200053
AA
-0.0102431
0.0267544
200070
AA
-0.102803
0
200078
BB
0.0538066
1
200087
BB
0.0832449
0.981941
200091
AB
0.0132225
0.466363
200096
BB
-0.129768
1
200124
AB
0.074338
0.536975
200199
AB
-0.0213041
0.52906
200240
AB
0.0762257
0.528003
200251
AA
0.0170211
0.00344568
200258
AA
-0.0584873
0.00713815
200260
BB
-0.100594
1
200261
AA
0.0241569
0
200262
AB
0.0196713
0.543962
200519
AB
0.018832
0.523741
620901 18945 Kbytes .Supplementary file Size Download File type/resource GSM527480_4506201164_R01C02_Grn.idat.gz
3.4 Mb
(ftp) (http) IDAT
GSM527480_4506201164_R01C02_Red.idat.gz
3.5 Mb
(ftp) (http) IDAT
Processed data included within Sample table
