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Status
Public on May 01, 2010
Title
control-3-PAEC
Sample type
genomic
Source name
airway endothelial cells cultured from subject control-3
Organism
Homo sapiens
Characteristics
disease state: Control (non-diseased subject) cell type: airway endothelial cell
Treatment protocol
none
Growth protocol
as reported in Xu, W., Koeck, T., Lara, A. R., Neumann, D., DiFilippo, F. P., Koo, M., Janocha, A. J., Masri, F. A., Arroliga, A. C., Jennings, C. et al. (2007) Proc. Natl. Acad. Sci. U. S. A 104, 1342-1347.
Extracted molecule
genomic DNA
Extraction protocol
Qiagen DNA mini
Label
C-Bio and A-DNP
Label protocol
standard Illumina
Hybridization protocol
standard Illumina
Scan protocol
standard Illumina
Data processing
standard Illumina
Submission date
Mar 29, 2010
Last update date
Mar 30, 2010
Contact name
Christopher D Coldren
E-mail(s)
Chris.Coldren@ucdenver.edu
Phone
303 724 6056
Organization name
University of Colorado School of Medicine
Department
Medicine
Lab
Pulmonary Sciences and Critical Care Medicine
Street address
12700 East 17th Place
City
Aurora
State/province
CO
ZIP/Postal code
80045
Country
USA
Platform ID
GPL6985
Series (1)
GSE21097
Acquired chromosome abnormalities in the lungs of patients with Pulmonary Arterial Hypertension (Illumina)
Data table header descriptions
ID_REF
VALUE
genotype call
Log R ratio
B allele frequency
Data table
ID_REF
VALUE
Log R ratio
B allele frequency
cnvi0000001-126_T_R_1514230395
NC
0.00930947
-0.512365
cnvi0000002-126_T_R_1514230396
NC
1
0.0206557
cnvi0000003-126_T_F_1514230397
NC
0.00821166
0.166682
cnvi0000004-126_T_F_1514265395
NC
0.993682
0.0576122
cnvi0000005-126_T_R_1514265396
NC
0.0526395
-0.168097
cnvi0000006-126_B_R_1514265397
NC
0.0115497
-0.198385
cnvi0000008-126_T_F_1514230398
NC
1
0.0611749
cnvi0000009-126_B_R_1514230399
NC
1
0.187449
cnvi0000010-126_T_F_1514230400
NC
0.0176877
-0.0458128
cnvi0000011-126_T_F_1514230401
NC
0.0147991
-0.0616792
cnvi0000012-126_B_F_1514265399
NC
0.00763558
-0.00235955
cnvi0000013-126_T_R_1514265400
NC
0.0566246
-0.0504334
cnvi0000014-126_T_F_1514265401
NC
0.00313086
0.0779687
cnvi0000015-126_T_F_1514265402
NC
1
-0.10069
cnvi0000016-126_B_F_1514230402
NC
0
0.0599443
cnvi0000017-126_B_F_1514265403
NC
0
0.0198294
cnvi0000018-126_T_F_1514265404
NC
0.999637
0.0670509
cnvi0000019-126_B_F_1514230403
NC
1
-0.015635
cnvi0000020-126_T_F_1514230404
NC
1
0.0716946
cnvi0000021-126_T_R_1514230405
NC
1
-0.0217907
Total number of rows: 373397 Table truncated, full table size 17999 Kbytes .Supplementary file
Size
Download
File type/resource
GSM527490_4312183790_R02C01_Grn.idat.gz
2.2 Mb
(ftp) (http)
IDAT
GSM527490_4312183790_R02C01_Red.idat.gz
2.2 Mb
(ftp) (http)
IDAT
Processed data included within Sample table