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Sample GSM527490 Query DataSets for GSM527490
Status Public on May 01, 2010
Title control-3-PAEC
Sample type genomic
 
Source name airway endothelial cells cultured from subject control-3
Organism Homo sapiens
Characteristics disease state: Control (non-diseased subject)
cell type: airway endothelial cell
Treatment protocol none
Growth protocol as reported in Xu, W., Koeck, T., Lara, A. R., Neumann, D., DiFilippo, F. P., Koo, M., Janocha, A. J., Masri, F. A., Arroliga, A. C., Jennings, C. et al. (2007) Proc. Natl. Acad. Sci. U. S. A 104, 1342-1347.
Extracted molecule genomic DNA
Extraction protocol Qiagen DNA mini
Label C-Bio and A-DNP
Label protocol standard Illumina
 
Hybridization protocol standard Illumina
Scan protocol standard Illumina
Data processing standard Illumina
 
Submission date Mar 29, 2010
Last update date Mar 30, 2010
Contact name Christopher D Coldren
E-mail(s) Chris.Coldren@ucdenver.edu
Phone 303 724 6056
Organization name University of Colorado School of Medicine
Department Medicine
Lab Pulmonary Sciences and Critical Care Medicine
Street address 12700 East 17th Place
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
 
Platform ID GPL6985
Series (1)
GSE21097 Acquired chromosome abnormalities in the lungs of patients with Pulmonary Arterial Hypertension (Illumina)

Data table header descriptions
ID_REF
VALUE genotype call
Log R ratio
B allele frequency

Data table
ID_REF VALUE Log R ratio B allele frequency
cnvi0000001-126_T_R_1514230395 NC 0.00930947 -0.512365
cnvi0000002-126_T_R_1514230396 NC 1 0.0206557
cnvi0000003-126_T_F_1514230397 NC 0.00821166 0.166682
cnvi0000004-126_T_F_1514265395 NC 0.993682 0.0576122
cnvi0000005-126_T_R_1514265396 NC 0.0526395 -0.168097
cnvi0000006-126_B_R_1514265397 NC 0.0115497 -0.198385
cnvi0000008-126_T_F_1514230398 NC 1 0.0611749
cnvi0000009-126_B_R_1514230399 NC 1 0.187449
cnvi0000010-126_T_F_1514230400 NC 0.0176877 -0.0458128
cnvi0000011-126_T_F_1514230401 NC 0.0147991 -0.0616792
cnvi0000012-126_B_F_1514265399 NC 0.00763558 -0.00235955
cnvi0000013-126_T_R_1514265400 NC 0.0566246 -0.0504334
cnvi0000014-126_T_F_1514265401 NC 0.00313086 0.0779687
cnvi0000015-126_T_F_1514265402 NC 1 -0.10069
cnvi0000016-126_B_F_1514230402 NC 0 0.0599443
cnvi0000017-126_B_F_1514265403 NC 0 0.0198294
cnvi0000018-126_T_F_1514265404 NC 0.999637 0.0670509
cnvi0000019-126_B_F_1514230403 NC 1 -0.015635
cnvi0000020-126_T_F_1514230404 NC 1 0.0716946
cnvi0000021-126_T_R_1514230405 NC 1 -0.0217907

Total number of rows: 373397

Table truncated, full table size 17999 Kbytes.




Supplementary file Size Download File type/resource
GSM527490_4312183790_R02C01_Grn.idat.gz 2.2 Mb (ftp)(http) IDAT
GSM527490_4312183790_R02C01_Red.idat.gz 2.2 Mb (ftp)(http) IDAT
Processed data included within Sample table

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