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Status
Public on May 01, 2010
Title
PAH-7-PASMC-A
Sample type
genomic
Source name
pulmonary artery smooth muscle cells cultured from subject PAH-7, culture A
Organism
Homo sapiens Characteristics
disease state: Pulmonary Arterial Hypertension
Treatment protocol
none
Growth protocol
as reported in Xu, W., Koeck, T., Lara, A. R., Neumann, D., DiFilippo, F. P., Koo, M., Janocha, A. J., Masri, F. A., Arroliga, A. C., Jennings, C. et al. (2007) Proc. Natl. Acad. Sci. U. S. A 104, 1342-1347.
Extracted molecule
genomic DNA
Extraction protocol
Qiagen DNA mini
Label
C-Bio and A-DNP
Label protocol
standard Illumina
Hybridization protocol
standard Illumina
Scan protocol
standard Illumina
Data processing
standard Illumina
Submission date
Mar 29, 2010
Last update date
Mar 30, 2010
Contact name
Christopher D Coldren
E-mail(s)
Chris.Coldren@ucdenver.edu Phone
303 724 6056
Organization name
University of Colorado School of Medicine
Department
Medicine
Lab
Pulmonary Sciences and Critical Care Medicine
Street address
12700 East 17th Place
City
Aurora
State/province
CO
ZIP/Postal code
80045
Country
USA
Platform ID
GPL6985 Series (1)
GSE21097 Acquired chromosome abnormalities in the lungs of patients with Pulmonary Arterial Hypertension (Illumina)
Data table header descriptions ID_REF VALUE genotype call
Log R ratio B allele frequency
Data table ID_REF VALUE Log R ratio B allele frequency cnvi0000001-126_T_R_1514230395
NC
-0.598583
0
cnvi0000002-126_T_R_1514230396
NC
-0.116469
1
cnvi0000003-126_T_F_1514230397
NC
0.102738
0.00142411
cnvi0000004-126_T_F_1514265395
NC
-0.0208283
1
cnvi0000005-126_T_R_1514265396
NC
-0.418516
0.00664418
cnvi0000006-126_B_R_1514265397
NC
-0.478452
0
cnvi0000008-126_T_F_1514230398
NC
-0.117798
0.999983
cnvi0000009-126_B_R_1514230399
NC
-0.0267935
1
cnvi0000010-126_T_F_1514230400
NC
-0.0785771
0.0139578
cnvi0000011-126_T_F_1514230401
NC
-0.235182
0.0133071
cnvi0000012-126_B_F_1514265399
NC
0.044901
0.00743952
cnvi0000013-126_T_R_1514265400
NC
0.0384661
0.306455
cnvi0000014-126_T_F_1514265401
NC
0.0273064
0
cnvi0000015-126_T_F_1514265402
NC
-0.178033
1
cnvi0000016-126_B_F_1514230402
NC
0.0831534
0
cnvi0000017-126_B_F_1514265403
NC
-0.109535
0.00897227
cnvi0000018-126_T_F_1514265404
NC
-0.114734
1
cnvi0000019-126_B_F_1514230403
NC
-0.110521
1
cnvi0000020-126_T_F_1514230404
NC
-0.0177094
1
cnvi0000021-126_T_R_1514230405
NC
0.143823
1
373397 17635 Kbytes .Supplementary file Size Download File type/resource GSM527501_4312183601_R01C01_Grn.idat.gz
2.2 Mb
(ftp) (http) IDAT
GSM527501_4312183601_R01C01_Red.idat.gz
2.2 Mb
(ftp) (http) IDAT
Processed data included within Sample table
