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Sample GSM5280 Query DataSets for GSM5280
Status Public on Apr 18, 2003
Title 40mJ/cm2 UV:ctrl (8h)
Sample type RNA
 
Channel 1
Source name UV
Organism Mycobacterium tuberculosis
Extracted molecule total RNA
 
Channel 2
Source name control
Organism Mycobacterium tuberculosis
Extracted molecule total RNA
 
 
Description H37Rv irradiated with UV at 40 mJ/cm2 in open Petri dish (2E+10 cells in 5mL 7H9/ADC/Tween) with 8h recovery in 50mL 7H9/ADC/Tween at 37C versus control unirradiated cells
Sample_array_print_batch: Mtaa-04
Sample_image_analysis_software: Axon GenePix Pro
Sample_image_analysis_software_version: 3.0.6.73
Sample_microarray_scanner: GenePix 4000A [55478]
Sample_NIH_mAdb_system_expt_id: 25466
Sample_organism_strain: H37Rv
Sample_treatment_agent: UV radiation
Sample_treatment_dose: 40
Sample_treatment_dose_unit: mJ/cm2
Sample_treatment_timepoint: 8
Sample_treatment_timepoint_unit: h
Sample_treatment_vehicle: None
Keywords = DNA damage
 
Submission date Mar 31, 2003
Last update date Nov 21, 2005
Contact name Helena I Boshoff
E-mail(s) hboshoff@niaid.nih.gov
Phone 301-451-9438
Fax 301-402-0993
Organization name NIAID/ NIH
Department LIG
Lab Tuberculosis Research Section
Street address 12441 Parklawn Drive
City Rockville
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL280
Series (1)
GSE365 DNA repair in Mycobacterium tuberculosis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
1010081 -0.0127813 6 1 1 547 194 83 53 669 218 66 18 0 0.971 -0.0127813
1010082 -0.0324523 8 1 1 288 139 80 29 341 163 58 15 0 0.928 -0.0324523
1010083 0.0161973 6 2 1 858 429 84 52 1007 476 66 18 0 1.038 0.0161973
1010084 0.0378253 8 2 1 310 149 81 34 322 149 57 15 0 1.091 0.0378253
1010085 0.0170333 6 3 1 797 302 83 51 929 234 62 19 0 1.040 0.0170333
1010086 -0.0443123 8 3 1 1135 507 80 33 1529 609 54 15 0 0.903 -0.0443123
1010087 0.1000263 6 4 1 1299 624 84 58 1281 594 63 21 0 1.259 0.1000263
1010088 0.0358303 8 4 1 899 476 75 36 1011 512 53 15 0 1.086 0.0358303
1010089 -0.0030513 6 5 1 390 128 88 46 448 117 64 18 0 0.993 -0.0030513
1010090 0.0773683 8 5 1 499 179 74 37 502 170 53 15 0 1.195 0.0773683
1010091 0.2586373 6 6 1 792 316 92 69 552 168 65 18 0 1.814 0.2586373
1010092 0.1383033 8 6 1 430 150 77 28 377 128 53 14 0 1.375 0.1383033
1010093 0.5808113 14 1 1 592 197 82 39 230 46 61 17 0 3.809 0.5808113
1010094 -0.0083313 16 1 1 296 121 80 30 335 123 57 16 0 0.981 -0.0083313
1010095 0.1102533 14 2 1 371 156 83 62 346 130 64 18 0 1.289 0.1102533
1010096 -0.1095793 16 2 1 464 206 78 30 684 288 57 16 0 0.777 -0.1095793
1010097 -0.0163743 14 3 1 278 98 75 58 325 120 59 18 0 0.963 -0.0163743
1010098 -0.2153833 16 3 1 1464 692 82 30 2921 1332 56 18 0 0.609 -0.2153833
1010099 -0.0438323 14 4 1 1049 436 77 28 1414 582 57 17 0 0.904 -0.0438323
1010100 -0.2533663 16 4 1 18468 9155 80 39 41643 19110 54 28 0 0.558 -0.2533663

Total number of rows: 4320

Table truncated, full table size 306 Kbytes.




Supplementary data files not provided
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