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Sample GSM5291 Query DataSets for GSM5291
Status Public on Apr 18, 2003
Title 60mJ/cm2 UV:ctrl (4h)
Sample type RNA
 
Channel 1
Source name UV
Organism Mycobacterium tuberculosis
Extracted molecule total RNA
 
Channel 2
Source name control
Organism Mycobacterium tuberculosis
Extracted molecule total RNA
 
 
Description H37Rv irradiated with UV at 60 mJ/cm2 in open Petri dish (2E+10 cells in 5mL 7H9/ADC/Tween) with 4h recovery in 50mL 7H9/ADC/Tween at 37C versus control unirradiated cells
Sample_array_print_batch: Mtaa-05
Sample_image_analysis_software: Axon GenePix Pro
Sample_image_analysis_software_version: 3.0.6.66
Sample_microarray_scanner: GenePix 4000B [82425]
Sample_NIH_mAdb_system_expt_id: 24092
Sample_organism_strain: H37Rv
Sample_treatment_agent: UV radiation
Sample_treatment_dose: 60
Sample_treatment_dose_unit: mJ/cm2
Sample_treatment_timepoint: 4
Sample_treatment_timepoint_unit: h
Sample_treatment_vehicle: None
Keywords = DNA damage
 
Submission date Mar 31, 2003
Last update date Nov 21, 2005
Contact name Helena I Boshoff
E-mail(s) hboshoff@niaid.nih.gov
Phone 301-451-9438
Fax 301-402-0993
Organization name NIAID/ NIH
Department LIG
Lab Tuberculosis Research Section
Street address 12441 Parklawn Drive
City Rockville
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL280
Series (1)
GSE365 DNA repair in Mycobacterium tuberculosis

Data table header descriptions
ID_REF NCI mAdb well id
VALUE same as UNF_VALUE but with flagged values removed
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_Median Sample 1 (Red Channel) Median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_BKD_Median Sample 2 Green Channel) Median Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
PRE_VALUE Calibrated Ratio
UNF_VALUE log ratio of PRE_VALUE

Data table
ID_REF VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_Median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_Median CH2_BKD_SD Flag PRE_VALUE UNF_VALUE
1010081 0.0484423 6 1 1 1060 338 153 51 781 226 96 16 0 1.118 0.0484423
1010082 0.1048283 8 1 1 1431 540 236 67 963 355 170 24 0 1.273 0.1048283
1010083 -0.0419143 6 2 1 1011 345 155 52 895 314 99 16 0 0.908 -0.0419143
1010084 0.0685573 8 2 1 1347 473 241 66 969 310 171 27 0 1.171 0.0685573
1010085 -0.1169073 6 3 1 946 301 158 56 972 321 101 17 0 0.764 -0.1169073
1010086 -0.0428723 8 3 1 1882 572 238 63 1702 522 169 26 0 0.906 -0.0428723
1010087 0.0136803 6 4 1 1533 487 161 55 1224 376 101 16 0 1.032 0.0136803
1010088 0.2362853 8 4 1 3641 1296 232 67 1843 670 172 24 0 1.723 0.2362853
1010089 0.0207753 6 5 1 874 263 159 52 677 183 101 17 0 1.049 0.0207753
1010090 0.1089033 8 5 1 1404 495 242 70 940 320 176 27 0 1.285 0.1089033
1010091 0.0606983 6 6 1 1105 343 160 54 796 238 102 18 0 1.150 0.0606983
1010092 0.0445403 8 6 1 867 266 256 75 647 201 181 48 0 1.108 0.0445403
1010093 0.2253093 14 1 1 1040 429 141 47 544 220 92 15 0 1.680 0.2253093
1010094 -0.1007273 16 1 1 494 137 186 58 456 117 128 20 0 0.793 -0.1007273
1010095 0.0107243 14 2 1 1057 426 148 49 844 346 95 17 0 1.025 0.0107243
1010096 0.0484423 16 2 1 1385 397 182 54 1032 294 123 20 0 1.118 0.0484423
1010097 0.0503803 14 3 1 798 301 149 53 582 214 94 19 0 1.123 0.0503803
1010098 0.0322163 16 3 1 5142 1564 188 56 4017 1332 131 24 0 1.077 0.0322163
1010099 0.0413933 14 4 1 1957 749 149 48 1481 550 93 15 0 1.100 0.0413933
1010100 -0.2890373 16 4 1 30425 8200 191 60 49850 13685 133 24 0 0.514 -0.2890373

Total number of rows: 4320

Table truncated, full table size 317 Kbytes.




Supplementary data files not provided
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