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Status |
Public on Feb 18, 2022 |
Title |
10X Adult SVZ 01 |
Sample type |
SRA |
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Source name |
brain
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Organism |
Mus musculus |
Characteristics |
age: Adult
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Extracted molecule |
total RNA |
Extraction protocol |
Single-cell suspensions were processed through Chromium 10X to generate single-cell cDNA libraries attached to microbeads Microbeads were counted, and amplified by PCR, and the 3' end of the cDNA prepared for sequencing using a modified Nextera XT protocol
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
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Description |
10X Adult SVZ 01
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Data processing |
Raw sequencing data was processed through 10X Genomics CellRanger v3.0.2 using default parameters to obtain the gene expression matrices Genome_build: mm10 Supplementary_files_format_and_content: mtx matrix files
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Submission date |
May 13, 2021 |
Last update date |
Feb 18, 2022 |
Contact name |
Steve Potter |
Organization name |
Cincinnati Children's Hospital Research Foundation
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Department |
Developmental Biology
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Street address |
240 Albert Sabin Way
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City |
Cincinnati |
State/province |
Ohio |
ZIP/Postal code |
45229 |
Country |
USA |
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Platform ID |
GPL24247 |
Series (1) |
GSE174392 |
Olig2 Defines a Unique Subset of Neural Stem Cells That Produce Specific Olfactory Bulb Interneuron Subtypes in the Subventricular Zone of Postnatal and Adult Mice |
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Relations |
BioSample |
SAMN19156825 |
SRA |
SRX10867472 |
Supplementary file |
Size |
Download |
File type/resource |
GSM5293532_Adult-SVZ-01-barcodes.tsv.gz |
20.0 Mb |
(ftp)(http) |
TSV |
GSM5293532_Adult-SVZ-01-features.tsv.gz |
250.8 Kb |
(ftp)(http) |
TSV |
GSM5293532_Adult-SVZ-01-matrix.mtx.gz |
171.4 Mb |
(ftp)(http) |
MTX |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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