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| Status |
Public on Feb 18, 2022 |
| Title |
10X Adult SVZ 02 |
| Sample type |
SRA |
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| Source name |
brain
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| Organism |
Mus musculus |
| Characteristics |
age: Adult
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| Extracted molecule |
total RNA |
| Extraction protocol |
Single-cell suspensions were processed through Chromium 10X to generate single-cell cDNA libraries attached to microbeads
Microbeads were counted, and amplified by PCR, and the 3' end of the cDNA prepared for sequencing using a modified Nextera XT protocol
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Description |
10X Adult SVZ 02
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| Data processing |
Raw sequencing data was processed through 10X Genomics CellRanger v3.0.2 using default parameters to obtain the gene expression matrices
Genome_build: mm10
Supplementary_files_format_and_content: mtx matrix files
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| Submission date |
May 13, 2021 |
| Last update date |
Feb 18, 2022 |
| Contact name |
Steve Potter |
| Organization name |
Cincinnati Children's Hospital Research Foundation
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| Department |
Developmental Biology
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| Street address |
240 Albert Sabin Way
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| City |
Cincinnati |
| State/province |
Ohio |
| ZIP/Postal code |
45229 |
| Country |
USA |
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| Platform ID |
GPL24247 |
| Series (1) |
| GSE174392 |
Olig2 Defines a Unique Subset of Neural Stem Cells That Produce Specific Olfactory Bulb Interneuron Subtypes in the Subventricular Zone of Postnatal and Adult Mice |
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| Relations |
| BioSample |
SAMN19156824 |
| SRA |
SRX10867473 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM5293533_Adult-SVZ-02-barcodes.tsv.gz |
20.0 Mb |
(ftp)(http) |
TSV |
| GSM5293533_Adult-SVZ-02-features.tsv.gz |
250.8 Kb |
(ftp)(http) |
TSV |
| GSM5293533_Adult-SVZ-02-matrix.mtx.gz |
166.2 Mb |
(ftp)(http) |
MTX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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