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Sample GSM52949 Query DataSets for GSM52949
Status Public on Jun 10, 2005
Title TAF1 in HeLa cell, 0 minute - rep1 of 3
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using TAF1 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of TAF1 binding using RenLab ENCODE PCR tiling array. Array ID is ENC631B. Replicate 1 of 3.
 
Submission date Jun 07, 2005
Last update date Jun 24, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE2730 ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells

Data table header descriptions
ID_REF
VALUE log2 ratio
STATISTICS X-statistics
P-VAL p-value calculated using single array error model
F635_INT normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN F635 median intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation

Data table
ID_REF VALUE STATISTICS P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD
1 0.222099 7.64304400e-02 1.41731329e-01 918.2119 787.1991 1749 1768 556 75 86 62 3150 3163 723 452 459 133
2 0.179255 6.38912067e-02 1.84964582e-01 1754.5496 1549.5466 2493 2377 789 73 90 71 4121 4113 1335 458 465 135
3 0.019083 7.26844604e-03 4.59378153e-01 4112.4076 4058.3691 4337 4211 1395 72 84 60 7626 7420 2293 443 453 130
4 0.149348 5.50503171e-02 2.19897634e-01 1989.2580 1793.6301 2654 2539 863 75 85 58 4520 4406 1246 450 459 135
5 0.182124 6.89848085e-02 1.66500654e-01 2135.0540 1881.8458 2623 2652 699 76 87 65 4605 4537 1149 457 465 151
6 0.146005 4.68145925e-02 2.55601909e-01 1616.9169 1461.2876 2291 2281 1085 78 88 58 4175 4004 1742 455 463 136
7 0.388893 8.89772754e-02 1.05897106e-01 476.3268 363.7782 1285 1322 638 78 88 61 2347 2345 822 456 463 135
8 -0.065355 -2.46010478e-02 6.35040956e-01 1861.7461 1948.0243 2470 2438 762 77 88 62 4766 4602 1124 451 459 133
9 -0.228999 -7.00312726e-02 8.37140068e-01 323.4295 379.0662 1081 1071 321 79 90 64 2357 2380 413 444 457 138
10 0.196898 3.97598640e-02 2.88434795e-01 197.5419 172.3404 723 755 337 77 90 64 1450 1450 435 448 461 141
11 0.307045 1.01292565e-01 7.75898718e-02 614.6595 496.8266 1471 1488 400 76 88 62 2655 2659 542 438 447 132
12 0.114846 4.45076584e-02 2.66119952e-01 3206.5760 2961.2114 3576 3441 772 73 85 61 6156 5903 1537 436 448 132
13 -0.003770 -1.41273771e-03 5.07908675e-01 1418.7873 1422.4996 2167 2117 622 73 84 61 4052 3954 840 451 457 131
14 0.137424 3.45506763e-02 3.13887523e-01 847.6912 770.6707 1607 1706 969 76 87 61 3044 3134 1463 450 455 134
15 0.383430 7.36496295e-02 1.50673485e-01 530.2246 406.4769 1156 1389 820 76 86 60 2192 2450 1228 440 447 135
16 0.040862 1.33082215e-02 4.25924956e-01 913.8874 888.3664 1795 1759 618 77 86 59 3326 3295 978 441 454 131
17 0.033043 1.25445079e-02 4.30130805e-01 1323.1232 1293.1632 2069 2058 489 76 89 62 3859 3801 732 436 447 132
18 0.196237 3.55636978e-02 3.08862597e-01 271.0236 236.5559 857 955 496 74 87 63 1754 1824 712 444 451 130
19 0.133850 5.25052267e-02 2.30615027e-01 3429.9077 3126.0049 3652 3604 810 79 94 97 6216 6088 1354 435 444 142
20 0.067682 2.47942247e-02 3.63940591e-01 1828.6257 1744.8197 2561 2423 822 81 91 62 4523 4326 1245 439 446 128

Total number of rows: 25392

Table truncated, full table size 2803 Kbytes.




Supplementary file Size Download File type/resource
GSM52949.gpr.gz 2.2 Mb (ftp)(http) GPR

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