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GEO accession:
Sample GSM52949
Query DataSets for GSM52949
Status
Public on Jun 10, 2005
Title
TAF1 in HeLa cell, 0 minute - rep1 of 3
Sample type
genomic
Channel 1
Source name
Chromatin immunoprecipitated DNA using TAF1 antibody
Organism
Homo sapiens
Extracted molecule
genomic DNA
Channel 2
Source name
input DNA
Organism
Homo sapiens
Extracted molecule
genomic DNA
Description
Genome-wide location analysis of TAF1 binding using RenLab ENCODE PCR tiling array. Array ID is ENC631B. Replicate 1 of 3.
Submission date
Jun 07, 2005
Last update date
Jun 24, 2005
Contact name
Chunxu Qu
E-mail(s)
qchunxu@ucsd.edu
Phone
(858)822-5767
Organization name
Ludwig Institute for Cancer Research
Department
Gene Regulation
Lab
RenLab
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92093
Country
USA
Platform ID
GPL1454
Series (1)
GSE2730
ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells
Data table header descriptions
ID_REF
VALUE
log2 ratio
STATISTICS
X-statistics
P-VAL
p-value calculated using single array error model
F635_INT
normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT
normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN
F635 median intensity
F635_MEAN
F635 mean intensity
F635_SD
F635 standard deviation
B635_MEDIAN
B635 median intensity
B635_MEAN
B635 mean intensity
B635_SD
B635 standard deviation
F532_MEDIAN
F532 median intensity
F532_MEAN
F532 mean intensity
F532_SD
F532 standard deviation
B532_MEDIAN
B532 median intensity
B532_MEAN
B532 mean intensity
B532_SD
B532 standard deviation
Data table
ID_REF
VALUE
STATISTICS
P-VAL
F635_INT
F532_INT
F635_MEDIAN
F635_MEAN
F635_SD
B635_MEDIAN
B635_MEAN
B635_SD
F532_MEDIAN
F532_MEAN
F532_SD
B532_MEDIAN
B532_MEAN
B532_SD
1
0.222099
7.64304400e-02
1.41731329e-01
918.2119
787.1991
1749
1768
556
75
86
62
3150
3163
723
452
459
133
2
0.179255
6.38912067e-02
1.84964582e-01
1754.5496
1549.5466
2493
2377
789
73
90
71
4121
4113
1335
458
465
135
3
0.019083
7.26844604e-03
4.59378153e-01
4112.4076
4058.3691
4337
4211
1395
72
84
60
7626
7420
2293
443
453
130
4
0.149348
5.50503171e-02
2.19897634e-01
1989.2580
1793.6301
2654
2539
863
75
85
58
4520
4406
1246
450
459
135
5
0.182124
6.89848085e-02
1.66500654e-01
2135.0540
1881.8458
2623
2652
699
76
87
65
4605
4537
1149
457
465
151
6
0.146005
4.68145925e-02
2.55601909e-01
1616.9169
1461.2876
2291
2281
1085
78
88
58
4175
4004
1742
455
463
136
7
0.388893
8.89772754e-02
1.05897106e-01
476.3268
363.7782
1285
1322
638
78
88
61
2347
2345
822
456
463
135
8
-0.065355
-2.46010478e-02
6.35040956e-01
1861.7461
1948.0243
2470
2438
762
77
88
62
4766
4602
1124
451
459
133
9
-0.228999
-7.00312726e-02
8.37140068e-01
323.4295
379.0662
1081
1071
321
79
90
64
2357
2380
413
444
457
138
10
0.196898
3.97598640e-02
2.88434795e-01
197.5419
172.3404
723
755
337
77
90
64
1450
1450
435
448
461
141
11
0.307045
1.01292565e-01
7.75898718e-02
614.6595
496.8266
1471
1488
400
76
88
62
2655
2659
542
438
447
132
12
0.114846
4.45076584e-02
2.66119952e-01
3206.5760
2961.2114
3576
3441
772
73
85
61
6156
5903
1537
436
448
132
13
-0.003770
-1.41273771e-03
5.07908675e-01
1418.7873
1422.4996
2167
2117
622
73
84
61
4052
3954
840
451
457
131
14
0.137424
3.45506763e-02
3.13887523e-01
847.6912
770.6707
1607
1706
969
76
87
61
3044
3134
1463
450
455
134
15
0.383430
7.36496295e-02
1.50673485e-01
530.2246
406.4769
1156
1389
820
76
86
60
2192
2450
1228
440
447
135
16
0.040862
1.33082215e-02
4.25924956e-01
913.8874
888.3664
1795
1759
618
77
86
59
3326
3295
978
441
454
131
17
0.033043
1.25445079e-02
4.30130805e-01
1323.1232
1293.1632
2069
2058
489
76
89
62
3859
3801
732
436
447
132
18
0.196237
3.55636978e-02
3.08862597e-01
271.0236
236.5559
857
955
496
74
87
63
1754
1824
712
444
451
130
19
0.133850
5.25052267e-02
2.30615027e-01
3429.9077
3126.0049
3652
3604
810
79
94
97
6216
6088
1354
435
444
142
20
0.067682
2.47942247e-02
3.63940591e-01
1828.6257
1744.8197
2561
2423
822
81
91
62
4523
4326
1245
439
446
128
Total number of rows:
25392
Table truncated, full table size
2803 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM52949.gpr.gz
2.2 Mb
(ftp)
(http)
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