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Sample GSM52951 Query DataSets for GSM52951
Status Public on Jun 10, 2005
Title TAF1 in HeLa cell, 0 minute - rep3 of 3
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using TAF1 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of TAF1 binding using RenLab ENCODE PCR tiling array. Array ID is ENC488. Replicate 3 of 3.
 
Submission date Jun 07, 2005
Last update date Jun 24, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE2730 ENCODE: GWLA analysis of a few promoter and enhancer markers in HeLa cells

Data table header descriptions
ID_REF
VALUE log2 ratio
STATISTICS X-statistics
P-VAL p-value calculated using single array error model
F635_INT normalized F635 intensity with background intensity as well as blank intensity subtracted
F532_INT normalized F532 intensity witn background intensity as well as blank intensity subtracted
F635_MEDIAN F635 median intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation

Data table
ID_REF VALUE STATISTICS P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD
1 0.152550 5.04022220e-02 3.54499750e-01 372.9890 335.5628 873 871 376 95 115 90 714 714 218 216 219 64
2 0.393259 1.51780022e-01 1.30539229e-01 1293.7663 985.0835 1520 1596 505 100 116 86 1092 1096 271 217 221 65
3 -0.246767 -9.74345783e-02 7.64683130e-01 2358.0388 2797.9195 2247 2231 836 102 118 86 1816 1787 635 216 219 62
4 0.297100 1.14513925e-01 1.98243695e-01 1164.5402 947.8036 1510 1501 510 95 117 104 1105 1073 275 209 220 145
5 0.035745 1.37428938e-02 4.59474221e-01 1072.4909 1046.2445 1392 1435 532 100 119 88 1131 1119 363 211 215 60
6 0.208041 7.42044737e-02 2.91350932e-01 777.1345 672.7744 1249 1242 562 98 271 2366 997 942 375 211 589 4546
7 -2.100602 -2.90186987e-01 9.84169778e-01 707.7965 3035.6575 923 1108 1190 103 152 496 712 1897 6996 210 343 2436
8 0.233030 9.25500726e-02 2.46583221e-01 2117.5226 1801.6860 2073 2129 606 99 120 92 1445 1431 384 216 225 102
9 0.553239 1.88656907e-01 8.12220655e-02 446.6165 304.3639 946 994 352 101 123 98 659 669 155 212 226 156
10 0.105834 3.25383986e-02 4.04805244e-01 207.1247 192.4743 426 461 249 95 119 121 393 431 160 211 216 124
11 0.635680 2.12010447e-01 5.82287037e-02 857.0404 551.6233 1203 1328 679 100 125 108 784 875 344 211 217 69
12 -0.156902 -6.23997588e-02 6.77971943e-01 1537.8693 1714.5556 1754 1740 552 107 130 108 1415 1402 272 216 231 175
13 -0.054544 -2.15245227e-02 5.63314069e-01 1120.0096 1163.1644 1469 1470 442 106 130 149 1160 1171 264 214 263 602
14 0.895516 3.17426047e-01 9.37759290e-03 1160.4769 623.8199 1508 1541 550 98 115 86 936 912 237 208 212 59
15 0.443486 1.39971169e-01 1.50005954e-01 417.4915 307.0048 876 948 438 95 115 89 701 670 211 208 213 57
16 0.568530 2.12456085e-01 5.78457577e-02 1035.0678 697.9498 1412 1442 475 105 158 449 964 961 219 218 421 2806
17 0.272932 9.99743319e-02 2.29573020e-01 794.6366 657.6696 1161 1257 528 97 118 91 913 939 257 216 224 121
18 0.328126 9.50844076e-02 2.40701875e-01 275.4730 219.4337 676 691 361 93 116 94 505 510 196 211 213 75
19 -0.001908 -7.52142911e-04 5.02221776e-01 2740.3406 2743.9664 2522 2502 790 109 138 261 1704 1759 979 215 292 1135
20 0.072059 2.73867695e-02 4.19652073e-01 925.1727 880.0980 1292 1343 498 106 137 287 1059 1041 336 210 308 1254

Total number of rows: 25392

Table truncated, full table size 2788 Kbytes.




Supplementary file Size Download File type/resource
GSM52951.gpr.gz 2.1 Mb (ftp)(http) GPR

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