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Sample GSM5311734 Query DataSets for GSM5311734
Status Public on May 15, 2021
Title Wildtype
Sample type SRA
Source name Inguinal Adipose Tissue
Organism Mus musculus
Characteristics strain: C57BL/6
treatment: Cold acclimated followed by 1wk 6C
genotype/variation: Wildtype
Extracted molecule genomic DNA
Extraction protocol Adipose tissue is digested and enriched for the mature fraction. Adipocytes are then processed for nuclei isolation.
10X genomics scATAC-seq library construction protocol
Library strategy ATAC-seq
Library source genomic
Library selection other
Instrument model Illumina NextSeq 500
Data processing Cell Ranger ATAC
Cell Ranger produces a count matrix consisting of the counts of fragment ends within each peak region for each barcode. The matrix is then filtered to consist of only cell barcodes, and dimensional reduction is performed via LSA on the filtered peak-barcode matrix consisting of cut site counts for cell barcodes.
Genome_build: mm10
Supplementary_files_format_and_content: filtered_peak_bc_matrix
Submission date May 14, 2021
Last update date May 15, 2021
Contact name Kosaku Shinoda
Phone 7186781189
Organization name Albert Einstein College of Medicine
Lab Shinoda lab
Street address 1301 Morris Park Ave
City Bronx
State/province NY
ZIP/Postal code 10461
Country USA
Platform ID GPL19057
Series (1)
GSE174456 scATAC-seq of Inguinal Adipose Tissue of UCP1-KO and WT mice.
BioSample SAMN19193737
SRA SRX10883754

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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