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Sample GSM532288 Query DataSets for GSM532288
Status Public on Feb 01, 2011
Title Hoxa9-ER on day 5, rep 3
Sample type RNA
 
Source name Murine bone marrow transduced with epitope tagged forms of Hoxa9 on day 5
Organism Mus musculus
Characteristics cell type: Hoxa9-ER cells
gender: female
age: 6-8 week old
strain: C57BL/6
cell line: murine bone marrow transduced with epitope tagged forms of Hoxa9
time point: day 5
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Standard Affymetrix protocol.
Scan protocol GeneChips were scanned using the Affymetrix GeneArray Scanner.
Description Gene expression data from murine cell line transduced with epitope tagged forms of Hoxa9 day 5
Data processing The data were analyzed with robust multi-array average (RMA) normalization using default background adjustment and quantile normalization settings.
 
Submission date Apr 12, 2010
Last update date Sep 13, 2011
Contact name Jay Hess
E-mail(s) jayhess@med.umich.edu
Phone 734-763-6384
Fax 734-763-4782
URL http://www.pathology.med.umich.edu/faculty/Hess/index.html
Organization name University of Michigan
Department Pathology
Street address 1301 Catherine
City Ann Arbor
State/province MI
ZIP/Postal code 48109
Country USA
 
Platform ID GPL1261
Series (2)
GSE21299 Expression data from murine cell line transduced with epitope tagged forms of Hoxa9
GSE33518 Identification and characterization of Hoxa9 binding sites in hematopoietic cells

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1415670_at 9.562302073
1415671_at 12.23940675
1415672_at 11.71265055
1415673_at 9.476431149
1415674_a_at 10.02896281
1415675_at 9.23095222
1415676_a_at 11.74818138
1415677_at 10.81816827
1415678_at 10.5343509
1415679_at 11.6269278
1415680_at 9.378382514
1415681_at 10.47624585
1415682_at 8.453729726
1415683_at 10.89235608
1415684_at 9.416792821
1415685_at 9.426840713
1415686_at 10.22270675
1415687_a_at 13.77246082
1415688_at 9.980577985
1415689_s_at 9.335884493

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM532288.CEL.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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