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Sample GSM533406 Query DataSets for GSM533406
Status Public on Dec 31, 2010
Title Allelic status: HCC1008
Sample type genomic
 
Source name DNA from breast cancer cell line
Organism Homo sapiens
Characteristics cell line: HCC1008
catalog number: ATCC# CRL-2320
Treatment protocol standard Affymetrix protocol
Extracted molecule genomic DNA
Extraction protocol standard Affymetrix protocol
Label standard Affymetrix protocol
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Data obtained from caBIG (https://cabig.nci.nih.gov)
HCC1008
Data processing Analyzed using dChip with the reference genotypes of sixty individuals obtained from the dChip website
 
Submission date Apr 14, 2010
Last update date Dec 31, 2010
Contact name Raj Chari
E-mail(s) rchari@bccrc.ca
Organization name BC Cancer Research Centre
Department Cancer Genetics and Developmental Biology
Lab Wan Lam Lab
Street address 675 West 10th Avenue
City Vancouver
State/province BC
ZIP/Postal code V5Z 1L3
Country Canada
 
Platform ID GPL3720
Series (2)
GSE21347 An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer: allelic status
GSE21541 An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer

Data table header descriptions
ID_REF
VALUE dChip Allelic Imbalance Status (0=Retention, 1=Imbalance, -1=Uninformative)

Data table
ID_REF VALUE
SNP_A-1909444 0
SNP_A-2237149 0
SNP_A-4303947 0
SNP_A-2236359 0
SNP_A-2205441 0
SNP_A-2116190 0
SNP_A-4291020 0
SNP_A-2109914 0
SNP_A-2291997 0
SNP_A-4277872 0
SNP_A-2118217 0
SNP_A-1866065 0
SNP_A-2288244 0
SNP_A-1783407 0
SNP_A-2169457 0
SNP_A-4271011 0
SNP_A-2082515 0
SNP_A-1910751 0
SNP_A-2081399 0
SNP_A-2223642 0

Total number of rows: 237701

Table truncated, full table size 3714 Kbytes.




Supplementary file Size Download File type/resource
GSM533406_EA06028_0141_08E_Sty250_SS320537_PCRS.CEL.gz 27.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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