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Sample GSM540924 Query DataSets for GSM540924
Status Public on Mar 31, 2011
Title CCA1OX 2680min rep1_A20
Sample type RNA
Source name CCA1OX seedlings, dark, 2680 minutes after dawn day 4
Organism Arabidopsis thaliana
Characteristics genotype: CCA1OX
days after germination: 5
minutes after dawn day 4: 2680
light: dark
growth: growing
Growth protocol Plants were grown on 1X MSMO media supplemented with 3% sucrose
Extracted molecule total RNA
Extraction protocol total RNA was extracted using Qiagen RNeasy Plant Mini kit and manufactuer's instructions
Label biotin
Label protocol Biotinolyated cRNA was obtained using the protocol described by Schmid, M. et al. Nat. Genet. 37, 501-506 (2005)
Hybridization protocol Hybridization was performed according to the EukGE-WS2v4_450 protocol
Scan protocol Scanning was performed on a GCS3000 scanner
Description Gene expression data from Arabidopsis seedlings grown under alternating light / dark samples.
Re-analysis of GSM159304
K Nozue 07.12.05 20 ATH1.CEL
Sample name: A20
Data processing Data was normalized using the rma function of the affy package in R/Bioconductor
Submission date May 05, 2010
Last update date Mar 31, 2011
Contact name Julin N Maloof
Phone (530) 752-8077
Fax (530) 752-5410
Organization name University of California, Davis
Department Plant Biology
Street address One Shields Ave
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platform ID GPL198
Series (1)
GSE21684 Arabidopsis seedlings collected during hypocotyl elongation and hypocotyl stasis
Reanalysis of GSM159304

Data table header descriptions
VALUE log2 RMA signal intensity

Data table
244901_at 2.979769398
244902_at 3.251221692
244903_at 5.185038621
244904_at 4.242031123
244905_at 2.257768254
244906_at 3.982809656
244907_at 2.123747106
244908_at 2.088060643
244909_at 2.136096221
244910_s_at 2.054015571
244911_at 1.913019026
244912_at 5.749849631
244913_at 2.520216552
244914_at 2.09114076
244915_s_at 2.613728211
244916_at 2.109522376
244917_at 2.65712696
244918_at 2.079202805
244919_at 2.730949978
244920_s_at 5.945839932

Total number of rows: 22810

Table truncated, full table size 490 Kbytes.

Supplementary file Size Download File type/resource
GSM540924.CEL.gz 1.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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