|
| Status |
Public on Jan 06, 2011 |
| Title |
small_intestine_polyadenylated_RNA-Seq |
| Sample type |
SRA |
| |
|
| Source name |
small_intestine_total_tissue
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
tissue: Small Intestine
extract protocol: SMART cDNA synthesis and SOLiD V2 fragment library construction
library selection: polyadenylated RNA
|
| Treatment protocol |
n/a
|
| Growth protocol |
small intestine and colon from 9-10 old mice were prepared and frozen in liquid nitrogen.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
sample specific
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
AB SOLiD System 2.0 |
| |
|
| Description |
RNA-Seq against polyadenylated RNA from small intestine
|
| Data processing |
Sequence reads were obtained using the Applied Biosystems Modular Analysis Pipeline (MOAP). Data is unfiltered and includes all identified beads.
|
| |
|
| Submission date |
May 05, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
Robert Haesler |
| E-mail(s) |
r.haesler@mucosa.de
|
| Phone |
+49 (0) 431 597 5754
|
| Organization name |
University Clinic of Schleswig Holstein
|
| Department |
IKMB / 1st Dept. of Medicine
|
| Lab |
Functional Genomics Platform
|
| Street address |
Schittenhelmstr. 12
|
| City |
Kiel |
| ZIP/Postal code |
24105 |
| Country |
Germany |
| |
|
| Platform ID |
GPL10279 |
| Series (2) |
| GSE21699 |
Architectural complexity of the polyadenylated intestinal transcriptome revealed by hybrid RNA sequencing |
| GSE21746 |
Mus musculus intestine |
|
| Relations |
| SRA |
SRX025094 |
| BioSample |
SAMN00025391 |
