NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM542644 Query DataSets for GSM542644
Status Public on Feb 06, 2011
Title BrdU labelled DNA rep1
Sample type SRA
 
Source name MM2d cells
Organism Arabidopsis thaliana
Characteristics cell line: MM2d
label: BrdU
Extracted molecule genomic DNA
Extraction protocol The DNA libraries for both BrdU DNA and unlabelled DNA were generated and sequenced on Genome Analyzer II as per the manufacturer instructions.
 
Library strategy OTHER
Library source genomic
Library selection RANDOM
Instrument model Illumina Genome Analyzer II
 
Description n/a
Data processing Alignment: Sequence reads were obtained and mapped to the TAIR8 Arabidospis genome using SeqMap. Uniquely mapping with three or fewer mismatches were retained.
 
Submission date May 11, 2010
Last update date May 15, 2019
Contact name Hume Stroud
Organization name UT Southwestern
Street address 5323 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL9302
Series (2)
GSE21781 Mapping origins of replication in Arabidopsis thaliana: Examination of BrdU labeled DNA and unlabeled DNA in one cell type
GSE21828 Mapping origins of replication in Arabidopsis thaliana
Relations
SRA SRX021362
BioSample SAMN00014094

Supplementary file Size Download File type/resource
GSM542644_sample1.bed.gz 21.6 Mb (ftp)(http) BED
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap