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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 25, 2010 |
| Title |
293S_rep5 |
| Sample type |
SRA |
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| Source name |
293S cell line
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| Organism |
Homo sapiens |
| Characteristics |
cell line: 293S
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| Treatment protocol |
100nM 4-OH-tamoxifen for 4-9 days for the Drosha experiment
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| Growth protocol |
Standard tissue culture practice
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| Extracted molecule |
total RNA |
| Extraction protocol |
Global 5`-phosphate-dependent RACE in WT, Ago2-KO and Drosha-excised mouse ES cells and human 293S cells
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
Illumina Genome Analyzer II |
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| Description |
5`-phosphorylated poly(A) RNA
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| Data processing |
n/a
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| Submission date |
May 24, 2010 |
| Last update date |
Mar 04, 2023 |
| Contact name |
Fedor Karginov |
| E-mail(s) |
karginov@ucr.edu
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| Organization name |
UC Riverside
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| Department |
MCSB
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| Street address |
900 University Ave
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| City |
Riverside |
| State/province |
California |
| ZIP/Postal code |
92521 |
| Country |
USA |
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| Platform ID |
GPL9115 |
| Series (1) |
| GSE21975 |
Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases |
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| Relations |
| SRA |
SRX021443 |
| BioSample |
SAMN00014143 |
| Supplementary data files not provided |
SRA Run Selector |
| Processed data not applicable for this record |
| Raw data are available in SRA |
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