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Sample GSM546448 Query DataSets for GSM546448
Status Public on Jun 25, 2010
Title WT_ES_rep4
Sample type SRA
 
Source name embryonic stem cells
Organism Mus musculus
Characteristics genotype: WT
cell type: embryonic stem cells
Treatment protocol 100nM 4-OH-tamoxifen for 4-9 days for the Drosha experiment
Growth protocol Standard tissue culture practice
Extracted molecule total RNA
Extraction protocol Global 5`-phosphate-dependent RACE in WT, Ago2-KO and Drosha-excised mouse ES cells and human 293S cells
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection other
Instrument model Illumina Genome Analyzer II
 
Description 5`-phosphorylated poly(A) RNA
Data processing n/a
 
Submission date May 24, 2010
Last update date Mar 04, 2023
Contact name Fedor Karginov
E-mail(s) karginov@ucr.edu
Organization name UC Riverside
Department MCSB
Street address 900 University Ave
City Riverside
State/province California
ZIP/Postal code 92521
Country USA
 
Platform ID GPL9250
Series (1)
GSE21975 Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases
Relations
SRA SRX021449
BioSample SAMN00014149

Supplementary data files not provided
SRA Run SelectorHelp
Processed data not applicable for this record
Raw data are available in SRA

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