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Sample GSM5465061 Query DataSets for GSM5465061
Status Public on Jun 07, 2023
Title WT [20181063L]
Sample type SRA
 
Source name Liver_WT
Organism Mus musculus
Characteristics tissue: Liver
strain background: C57BL/6
genotype: wild type
Extracted molecule total RNA
Extraction protocol Livers were removed, flash frozen on dry ice.
Samples were sent to LGC Genomics GmbH (Germany) for RNA extraction (GEN-9300-840), mRNA library (GEN27009) and NextSeq 500 (1x75bp) 400M single reads (GEN27222)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Data processing Demultiplexing of all libraries for each sequencing lane using Illumina bcl2fastq2.17.1.14 software (RAW). Clipping of sequencing adapter remnants from all raw reads (AdapterClipped).
Creation of FastQC report for all FASTQ files.
Supplementary_files_format_and_content: *ReadsPerGene.out.tab; read_counts.xlsx; koVswt.csv
 
Submission date Jul 21, 2021
Last update date Jun 07, 2023
Contact name Elizabeth Shephard
E-mail(s) e.shephard@ucl.ac.uk
Organization name University College London
Street address Gower Street
City London
ZIP/Postal code WC1E 6BT
Country United Kingdom
 
Platform ID GPL19057
Series (1)
GSE180575 Fmo5(-/-) mouse: liver transcriptomics
Relations
BioSample SAMN20342694
SRA SRX11515466

Supplementary file Size Download File type/resource
GSM5465061_Sample_20181063LReadsPerGene.out.tab.gz 346.5 Kb (ftp)(http) TAB
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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