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Sample GSM5465063 Query DataSets for GSM5465063
Status Public on Jun 07, 2023
Title Fmo5(-/-) KO [20183236L]
Sample type SRA
Source name Liver_Fmo5(-/-) KO
Organism Mus musculus
Characteristics tissue: Liver
strain background: C57BL/6
genotype: Fmo5(-/-)
Extracted molecule total RNA
Extraction protocol Livers were removed, flash frozen on dry ice.
Samples were sent to LGC Genomics GmbH (Germany) for RNA extraction (GEN-9300-840), mRNA library (GEN27009) and NextSeq 500 (1x75bp) 400M single reads (GEN27222)
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
Data processing Demultiplexing of all libraries for each sequencing lane using Illumina bcl2fastq2.17.1.14 software (RAW). Clipping of sequencing adapter remnants from all raw reads (AdapterClipped).
Creation of FastQC report for all FASTQ files.
Supplementary_files_format_and_content: *; read_counts.xlsx; koVswt.csv
Submission date Jul 21, 2021
Last update date Jun 07, 2023
Contact name Elizabeth Shephard
Organization name University College London
Street address Gower Street
City London
ZIP/Postal code WC1E 6BT
Country United Kingdom
Platform ID GPL19057
Series (1)
GSE180575 Fmo5(-/-) mouse: liver transcriptomics
BioSample SAMN20342638
SRA SRX11515468

Supplementary file Size Download File type/resource 351.8 Kb (ftp)(http) TAB
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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