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Sample GSM546986 Query DataSets for GSM546986
Status Public on Jun 02, 2010
Title At-LAP2-2
Sample type RNA
 
Channel 1
Source name LAP2-1 mutant Cy3
Organism Arabidopsis thaliana
Characteristics ecotype: Columbia
genotype: LAP2-1 mutant
Treatment protocol mutant
Growth protocol All plants were grown in soil or onto Murashige and Skoog (MS) standard medium pH 5.7 containing 0.8 g/L phytoagar at ~100-120 umol m-2 sec-1 for a 16-h photoperiod at 22°C
Extracted molecule total RNA
Extraction protocol kit: QIAGEN, Rneasy Mini
Label Cy3
Label protocol Kit: Low RNA Input Linear Amplification kit
 
Channel 2
Source name WT Control Cy5
Organism Arabidopsis thaliana
Characteristics ecotype: Columbia
genotype: wild type
Treatment protocol control
Growth protocol All plants were grown in soil or onto Murashige and Skoog (MS) standard medium pH 5.7 containing 0.8 g/L phytoagar at ~100-120 umol m-2 sec-1 for a 16-h photoperiod at 22°C
Extracted molecule total RNA
Extraction protocol kit: QIAGEN, Rneasy Mini
Label Cy5
Label protocol Kit: Low RNA Input Linear Amplification kit
 
 
Hybridization protocol hybridization_Kit: in situ hybridization plus
Scan protocol Scanner: Agilent DNA microarray Scaner
Description Manual: Agilent Technologies
Data processing Software: Feature Extraction ver 9.5.3.1 (lowess and rank consistency)
 
Submission date May 26, 2010
Last update date Nov 15, 2012
Contact name RANDEEP RAKWAL
E-mail(s) plantproteomics@gmail.com
Phone +81-(0)90-1853-7875
Organization name University of Tsukuba
Department Institute of Health and Sport Sciences
Lab Global Sport Innovation (GSI) 403
Street address 1-1-1 Tennodai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8574
Country Japan
 
Platform ID GPL12621
Series (1)
GSE22000 The Arabidopsis Aminopeptidase LAP2 Regulates Plant Growth, Leaf Longivity and Stress Response

Supplementary file Size Download File type/resource
GSM546986_US22502699_252116910329_S01_GE2_v5_95_Feb07_1_2.txt.gz 15.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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