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Sample GSM5471346 Query DataSets for GSM5471346
Status Public on Dec 02, 2022
Title CKO_2
Sample type SRA
 
Source name retina
Organism Mus musculus
Characteristics genotype: Mettl3 knockout
tissue: Retina
age: Postnatal day 7
Treatment protocol N/A
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol TRIzol
NEBNext UltraTM RNA library Prep Kit for Illumina following manufacturer's protocol.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description CK_2
Data processing Basecalls performed using CASAVA.
Clean reads were aligned to the mouse reference genome (mm10) using Hisat2.
featureCounts was used to count the reads numbers mapped to each gene.
Genome_build: mm10 (GRCm38)
Supplementary_files_format_and_content: gene_count.txt: Tab-delimited text file includes read counts for each gene.
 
Submission date Jul 25, 2021
Last update date Dec 02, 2022
Contact name SHUYI CHEN
E-mail(s) chenshy23@mail.sysu.edu.cn
Organization name Zhongshan Ophthalmic Center, SYSU
Department State Key Laboratory of Ophthalmology
Street address 54 S. Xianlie Rd
City Guangzhou
State/province Guangdong
ZIP/Postal code 510060
Country China
 
Platform ID GPL13112
Series (2)
GSE180813 Mettl3 regulates late-stage retinogenesis
GSE180815 Mettl3 regulates late-stage retinogenesis and mouse retina m6A epitranscriptome
Relations
BioSample SAMN20394124
SRA SRX11549607

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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