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Sample GSM549152 Query DataSets for GSM549152
Status Public on Jan 26, 2011
Title AnCHM1
Sample type genomic
 
Source name Androgenetic complete hydatidiform mole
Organism Homo sapiens
Characteristics tissue: Androgenetic complete hydatidiform mole
Treatment protocol All samples were bisulfite modified using kits from Qiagen and Sigma
Growth protocol Placenta samples were stored in RNAlater prior to DNA extraction, WBC samples are collected in ACD tubes, AnCHMs and MCT DNA were extracted from snap frozen tissues.
Extracted molecule genomic DNA
Extraction protocol DNA extraction was performed using standard protocols.
Label Cy3, Cy5
Label protocol Standard Illumina protocol for DNA methylation.
 
Hybridization protocol Standard Illumina protocol for DNA methylation.
Scan protocol Standard Illumina protocol for DNA methylation using the Bead Array Scanner.
Description Androgenetic complete hydatidiform mole 1
Data processing The data was generated using the BeadStudio 2.0 software provided by Illumina by following their analytical matrix. Average normalization was performed.
 
Submission date Jun 02, 2010
Last update date Jan 26, 2011
Contact name Rosanna Weksberg
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Weksberg Lab
Street address 555 University Ave.
City Toronto
State/province Ontario
ZIP/Postal code M5G 2L3
Country Canada
 
Platform ID GPL8490
Series (1)
GSE22091 A Novel Approach Identifies New Differentially Methylated Regions (DMRs) Associated with Imprinted Genes

Data table header descriptions
ID_REF
VALUE Methylation status of the interrogated CpG site is then calculated as the ratio of fluorescent signal from one allele relative to the sum of both methylated and unmethylated alleles. This value also known as the β value, ranges from 0 (unmethylated) to 1 (fully methylated).
Detection Pval
Avg_NBEADS_A
Avg_NBEADS_B
BEAD_STDERR_A
BEAD_STDERR_B
Signal_A
Signal_B

Data table
ID_REF VALUE Detection Pval Avg_NBEADS_A Avg_NBEADS_B BEAD_STDERR_A BEAD_STDERR_B Signal_A Signal_B
cg00000292 0.7289422 3.68E-38 19 24 162.1969 405.607 1686 4803
cg00002426 0.1694977 3.68E-38 21 16 406.5399 44.95288 4447 928
cg00003994 0.08640536 3.68E-38 20 17 370.2928 55.67809 6170 593
cg00005847 0.3941359 3.68E-38 15 14 84.68924 83.91464 2049 1398
cg00006414 0.0853755 3.68E-38 10 12 149.5757 31.30655 2214 216
cg00007981 0.02629009 3.68E-38 24 21 688.1025 39.60008 11863 323
cg00008493 0.8921081 3.68E-38 20 16 59.2558 386.8398 1222 10931
cg00008713 0.04826871 3.68E-38 18 20 527.0303 39.83368 11829 605
cg00009407 0.07391264 3.68E-38 19 16 406.0659 47.03022 9886 797
cg00010193 0.4776028 3.68E-38 23 15 484.379 325.908 12705 11707
cg00011459 0.8167802 3.68E-38 16 16 90 217.75 411 2278
cg00012199 0.01551913 3.68E-38 20 22 341.8948 21.91347 8908 142
cg00012386 0.02828313 3.68E-38 21 17 923.4981 61.31923 19449 569
cg00012792 0.02285798 3.68E-38 12 17 788.3718 65.24058 26746 628
cg00013618 0.318412 3.68E-38 16 15 269.25 101 4879 2326
cg00014085 0.03721729 3.68E-38 21 28 360.4959 31.42338 6626 260
cg00014837 0.7128954 3.68E-38 14 20 118.664 207.9292 844 2344
cg00015770 0.1484857 3.68E-38 22 21 615.9369 123.8696 12327 2167
cg00016968 0.3356191 3.68E-38 12 18 471.4065 343.8121 8620 4405
cg00019495 0.03143485 3.68E-38 19 18 483.6084 16.28852 5631 186

Total number of rows: 27578

Table truncated, full table size 1697 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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