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Sample GSM549153 Query DataSets for GSM549153
Status Public on Jan 26, 2011
Title AnCHM2
Sample type genomic
 
Source name Androgenetic complete hydatidiform mole
Organism Homo sapiens
Characteristics tissue: Androgenetic complete hydatidiform mole
Treatment protocol All samples were bisulfite modified using kits from Qiagen and Sigma
Growth protocol Placenta samples were stored in RNAlater prior to DNA extraction, WBC samples are collected in ACD tubes, AnCHMs and MCT DNA were extracted from snap frozen tissues.
Extracted molecule genomic DNA
Extraction protocol DNA extraction was performed using standard protocols.
Label Cy3, Cy5
Label protocol Standard Illumina protocol for DNA methylation.
 
Hybridization protocol Standard Illumina protocol for DNA methylation.
Scan protocol Standard Illumina protocol for DNA methylation using the Bead Array Scanner.
Description Androgenetic complete hydatidiform mole 2
Data processing The data was generated using the BeadStudio 2.0 software provided by Illumina by following their analytical matrix. Average normalization was performed.
 
Submission date Jun 02, 2010
Last update date Jan 26, 2011
Contact name Rosanna Weksberg
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Weksberg Lab
Street address 555 University Ave.
City Toronto
State/province Ontario
ZIP/Postal code M5G 2L3
Country Canada
 
Platform ID GPL8490
Series (1)
GSE22091 A Novel Approach Identifies New Differentially Methylated Regions (DMRs) Associated with Imprinted Genes

Data table header descriptions
ID_REF
VALUE Methylation status of the interrogated CpG site is then calculated as the ratio of fluorescent signal from one allele relative to the sum of both methylated and unmethylated alleles. This value also known as the β value, ranges from 0 (unmethylated) to 1 (fully methylated).
Detection Pval
Avg_NBEADS_A
Avg_NBEADS_B
BEAD_STDERR_A
BEAD_STDERR_B
Signal_A
Signal_B

Data table
ID_REF VALUE Detection Pval Avg_NBEADS_A Avg_NBEADS_B BEAD_STDERR_A BEAD_STDERR_B Signal_A Signal_B
cg00000292 0.7139091 3.68E-38 12 17 105.0778 305.707 1311 3521
cg00002426 0.3086374 3.68E-38 10 14 228.0002 160.9599 1757 829
cg00003994 0.04765904 3.68E-38 15 17 312.1624 37.95524 4436 227
cg00005847 0.206621 1.94E-29 22 20 80.80307 34.75172 1290 362
cg00006414 0.1173255 3.68E-38 14 26 146.4592 56.39212 1999 279
cg00007981 0.06523315 3.68E-38 21 18 426.3978 76.15804 7638 540
cg00008493 0.8795973 3.68E-38 19 14 80.29551 192.4798 1108 8825
cg00008713 0.06268732 3.68E-38 15 17 393.2369 59.12754 11159 753
cg00009407 0.06850597 3.68E-38 12 19 604.7744 79.96301 7868 586
cg00010193 0.5026655 3.68E-38 24 16 605.8405 207.5943 10722 10938
cg00011459 0.706278 5.46E-05 18 14 21.44891 58.68986 162 630
cg00012199 0.02827565 3.68E-38 13 17 352.512 40.49311 6189 183
cg00012386 0.04137541 3.68E-38 18 18 515.0095 66.46804 13477 586
cg00012792 0.02970224 3.68E-38 18 21 1023.419 81.08158 26034 800
cg00013618 0.6277589 3.68E-38 14 20 184.9448 188.6864 1654 2958
cg00014085 0.0357985 3.68E-38 17 18 141.1557 20.13046 4398 167
cg00014837 0.8839071 3.68E-38 10 16 49.33153 182.4634 190 2208
cg00015770 0.1123115 3.68E-38 18 22 388.4373 111.4872 11732 1497
cg00016968 0.4180966 3.68E-38 20 18 285.7695 237.9176 6852 4995
cg00019495 0.2060257 3.68E-38 13 18 221.048 97.62724 1692 465

Total number of rows: 27578

Table truncated, full table size 1689 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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