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Sample GSM549167 Query DataSets for GSM549167
Status Public on Jan 26, 2011
Title WBC13
Sample type genomic
 
Source name White blood cells
Organism Homo sapiens
Characteristics tissue: White blood cells
Treatment protocol All samples were bisulfite modified using kits from Qiagen and Sigma
Growth protocol Placenta samples were stored in RNAlater prior to DNA extraction, WBC samples are collected in ACD tubes, AnCHMs and MCT DNA were extracted from snap frozen tissues.
Extracted molecule genomic DNA
Extraction protocol DNA extraction was performed using standard protocols.
Label Cy3, Cy5
Label protocol Standard Illumina protocol for DNA methylation.
 
Hybridization protocol Standard Illumina protocol for DNA methylation.
Scan protocol Standard Illumina protocol for DNA methylation using the Bead Array Scanner.
Description White blood cells 13
Data processing The data was generated using the BeadStudio 2.0 software provided by Illumina by following their analytical matrix. Average normalization was performed.
 
Submission date Jun 02, 2010
Last update date Jan 26, 2011
Contact name Rosanna Weksberg
Organization name The Hospital for Sick Children
Department Genetics and Genome Biology
Lab Weksberg Lab
Street address 555 University Ave.
City Toronto
State/province Ontario
ZIP/Postal code M5G 2L3
Country Canada
 
Platform ID GPL8490
Series (1)
GSE22091 A Novel Approach Identifies New Differentially Methylated Regions (DMRs) Associated with Imprinted Genes

Data table header descriptions
ID_REF
VALUE Methylation status of the interrogated CpG site is then calculated as the ratio of fluorescent signal from one allele relative to the sum of both methylated and unmethylated alleles. This value also known as the β value, ranges from 0 (unmethylated) to 1 (fully methylated).
Detection Pval
Avg_NBEADS_A
Avg_NBEADS_B
BEAD_STDERR_A
BEAD_STDERR_B
Signal_A
Signal_B

Data table
ID_REF VALUE Detection Pval Avg_NBEADS_A Avg_NBEADS_B BEAD_STDERR_A BEAD_STDERR_B Signal_A Signal_B
cg00000292 0.7886824 3.68E-38 18 14 81.08158 210.7178 912 3777
cg00002426 0.8674437 3.68E-38 27 26 37.91267 196.2991 389 3200
cg00003994 0.1028881 3.68E-38 22 13 93.59512 24.51808 2385 285
cg00005847 0.09822831 3.68E-38 15 18 201.9115 34.34045 3921 438
cg00006414 0.01998962 3.68E-38 18 18 221.0887 12.25652 3675 77
cg00007981 0.03514224 3.68E-38 21 15 446.692 43.64358 7972 294
cg00008493 0.9834627 3.68E-38 18 20 23.57023 502.5172 160 15462
cg00008713 0.0242698 3.68E-38 18 17 678.8225 24.51303 18474 462
cg00009407 0.005296681 3.68E-38 12 24 862.2726 13.56773 14736 79
cg00010193 0.5857966 3.68E-38 17 13 647.085 825.5912 15216 21661
cg00011459 0.8280142 3.68E-38 10 15 16.76007 197.9586 288 1868
cg00012199 0.00544146 3.68E-38 22 16 475.864 8.314828 11232 62
cg00012386 0.02662624 3.68E-38 22 21 426.6146 29.4217 14669 404
cg00012792 0.0216755 3.68E-38 16 17 708.5 62.25 26304 585
cg00013618 0.8628954 3.68E-38 12 15 70.14806 260.385 1027 7093
cg00014085 0.01170152 3.68E-38 25 10 375.4 4.6 10204 122
cg00014837 0.7977129 3.68E-38 15 13 57.57835 183.5794 413 2023
cg00015770 0.1081455 3.68E-38 13 26 622.9283 141.1712 17309 2111
cg00016968 0.8998136 3.68E-38 14 22 98.08488 909.2227 2050 19310
cg00019495 0.2518564 3.68E-38 14 17 203.9203 156.0806 3527 1221

Total number of rows: 27578

Table truncated, full table size 1698 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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