|
| Status |
Public on Aug 25, 2021 |
| Title |
Human Ependymoma Tissue [EPEND020] |
| Sample type |
genomic |
| |
|
| Source name |
Human Ependymoma Tissue
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Ependymoma
methylation class: PFB
classifier score: 1
who grade: III
tumour location: PF
event free survival: 153
overall survival: 153
survival status: A
recurrence: No
1q gain: no gain
resection status: CSR
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA extracted from formalin fixed, paraffin embedded material using the Qiagen ALLprep kit as per protocol.
|
| Label |
biotin/dnp
|
| Label protocol |
Illumina Protocol
|
| |
|
| Hybridization protocol |
Illumina Protocol
|
| Scan protocol |
Illumina Protocol
|
| Description |
EPEND020
|
| Data processing |
Bioconductor (version 3.3) package minifi (version 1.18) using function preprocessIllumina. Data filtered for SNPs, sex chromosomes and probes with detection p-value>0.01.
|
| |
|
| Submission date |
Aug 24, 2021 |
| Last update date |
Sep 14, 2023 |
| Contact name |
Timothy A Ritzmann |
| E-mail(s) |
Timothy.ritzmann@nhs.net
|
| Organization name |
University of Nottingham
|
| Department |
Children's Brain Tumour Research Centre
|
| Street address |
Coates Road
|
| City |
Nottingham |
| ZIP/Postal code |
NG7 2UH |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE182707 |
DNA methylation profiles for the SIOP Ependymoma I Study |
|
| Relations |
| Reanalyzed by |
GSE243240 |
