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| Status |
Public on Dec 31, 2021 |
| Title |
L1701716: kd_3-3_dark_3d |
| Sample type |
SRA |
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| Source name |
Seedling
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| Organism |
Arabidopsis thaliana |
| Characteristics |
age: 3 days after germination
genotype: snrk1a1/a2
light: dark
treatment: -
tissue: seedling
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| Extracted molecule |
total RNA |
| Extraction protocol |
Seedlings were harvested, frozen in liquid nitrogen and RNA was harvested using QIAGEN RNEasy Micro-Kit.
RNA libraries were prepared for sequencing using standard Illumina protocols
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Data processing |
Sequenced reads were mapped to TAIR10 by STAR for the whole genome using featurecount.
Analysis were performed with DESeq2
Genome_build: TAIR10
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample
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| Submission date |
Aug 31, 2021 |
| Last update date |
Dec 31, 2021 |
| Contact name |
Markus Henninger |
| Organization name |
University of Würzburg
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| Street address |
Julius-von-Sachs Platz 2
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| City |
Würzburg |
| ZIP/Postal code |
97084 |
| Country |
Germany |
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| Platform ID |
GPL19580 |
| Series (1) |
| GSE183118 |
Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes |
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| Relations |
| BioSample |
SAMN21160071 |
| SRA |
SRX11975572 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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