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Sample GSM5551444 Query DataSets for GSM5551444
Status Public on Dec 31, 2021
Title L1701736: kd_5-2_light_5d
Sample type SRA
Source name Seedling
Organism Arabidopsis thaliana
Characteristics age: 5 days after germination
genotype: snrk1a1/a2
light: light
treatment: -
tissue: seedling
Extracted molecule total RNA
Extraction protocol Seedlings were harvested, frozen in liquid nitrogen and RNA was harvested using QIAGEN RNEasy Micro-Kit.
RNA libraries were prepared for sequencing using standard Illumina protocols
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
Data processing Sequenced reads were mapped to TAIR10 by STAR for the whole genome using featurecount.
Analysis were performed with DESeq2
Genome_build: TAIR10
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample
Submission date Aug 31, 2021
Last update date Dec 31, 2021
Contact name Markus Henninger
Organization name University of Würzburg
Street address Julius-von-Sachs Platz 2
City Würzburg
ZIP/Postal code 97084
Country Germany
Platform ID GPL19580
Series (1)
GSE183118 Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes
BioSample SAMN21160051
SRA SRX11975592

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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