NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM5605 Query DataSets for GSM5605
Status Public on Apr 05, 2003
Title Spleen vs Interferon-gamma (IFN gamma) Treated B cell 60min (set1)
Sample type RNA
 
Channel 1
Source name Spleen was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Interferon-gamma (IFN gamma) Treated B cells were labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description total RNA from mouse (male c57BL/6) spleen
total RNA from mouse (male c57BL/6) B cells treated with Interferon-gamma (IFN gamma) for 60min
 
Submission date Apr 04, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@its.caltech.edu
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE384 Spleen vs IFN gamma Treated B cell
GSE2050 Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
RATIO Raw Log10 Ratio
G_PROCESSED Green Processed signal, after dye normalization and background subtraction, used for computation of log ratio
R_PROCESSED Red Processed signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Intensity
R_MEAN Red Channel Mean Intensity
G_MEDIAN Green Channel Median Intensity
R_MEDIAN Red Channel Median Intensity
G_SD Green Channel Standard Deviation
R_SD Red Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
R_BG_MEAN Red Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
R_BG_MEDIAN Red Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_BG_SD Red Channel Background Standard Deviation
VALUE Processed Log2 Ratio after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF RATIO G_PROCESSED R_PROCESSED G_MEAN R_MEAN G_MEDIAN R_MEDIAN G_SD R_SD G_BG_MEAN R_BG_MEAN G_BG_MEDIAN R_BG_MEDIAN G_BG_SD R_BG_SD VALUE
1 -0.605004 35330 8772.83 44486 13841.7 44957 14863 6304.02 2507.01 777.275 893.294 771 888 42.1814 70.3216 0
2 -0.281562 127.807 66.8331 876.48 907.48 876 892 28.7911 57.4363 755.583 852.212 753.5 856 38.7818 64.0452 0
3 0.0280137 49.7026 53.0143 773.75 880.75 764 884 64.0823 51.475 746.538 841.577 742.5 834 39.6921 65.6081 0
4 -0.551168 81.7589 22.9809 785.96 792.92 780 797 36.3725 84.568 756.053 856.24 753 857 45.9721 61.3467 0
5 0 40.695 37.4546 744.846 831.115 736.5 843.5 42.7679 65.3069 739.753 828.709 735 825.5 41.2037 67.8555 0
6 -0.360478 331.59 144.585 1142.04 979.76 1131 983 67.8125 80.8086 751.891 819.769 747.5 815.5 40.8806 68.3189 0
7 -0.167582 61.103 41.5414 772.741 813.63 761 820 54.7242 77.6576 733.443 794.57 729 796.5 36.9814 71.0073 0
8 0 35.4343 29.9018 720.048 756.81 721 746 28.6347 38.6803 732.497 780.033 730 776 32.9684 58.9519 0
9 0.149445 3516.88 4961.38 5287.15 7684.62 5332 7691.5 183.816 254.831 730.929 751.353 730 746 31.7905 55.1545 0.496445544
10 0.293519 1204.58 2367.86 2274.08 4037.27 2151.5 3802 440.087 990.408 724.774 767.781 717 770 37.1848 66.4603 0.975049012
11 0.085382 34.5503 42.0565 720.077 773.231 711 772 42.4414 55.3529 713.606 749.856 707.5 743 35.7439 56.0993 0
12 0.217205 29.4795 48.61 710.231 795.808 710.5 792.5 32.4436 59.7415 716.237 759.224 711 756.5 29.9456 53.2105 0
13 0 36.5146 29.7403 719.6 787.88 721 784 26.1422 41.4078 731.153 793.516 728 794 35.0637 56.8104 0
14 0.348781 916.034 2045 1917.39 3670.86 1918.5 3659.5 174.209 388.842 749.726 844.013 750 836 36.8024 74.0506 1.158625403
15 0.179 1539.73 2325.12 2780.14 4131.82 1344 2031 2270.51 3585.72 789.936 926.365 784.5 929.5 45.6452 69.3943 0
16 0.214442 1974.54 3235.25 3387.96 5483.76 2625 3793 1459.05 2560.32 823.137 1012.61 820 1007 50.5851 94.2878 0
17 -0.712364 2213.81 429.315 3697.12 1671.38 2265 1513 2564.93 482.727 863.026 1113.09 861.5 1123.5 52.4519 93.7308 0
18 -0.357167 186.772 82.0625 1090.12 1249.69 1084.5 1239 42.8377 55.6006 894.186 1174.36 888 1173 62.4042 122.317 0
19 0.395016 3975.14 9871.18 6029.92 15248.5 6212.5 15657 880.841 2447.94 924.735 1272.99 920 1275 57.9565 129.147 1.312214748
20 -0.119342 5504.61 4182 8115.82 7289.46 8105.5 7069.5 1000.5 935.396 992.298 1434.68 988 1428 74.3786 129.03 -0.396445543

Total number of rows: 16273

Table truncated, full table size 1972 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap