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Sample GSM5631806 Query DataSets for GSM5631806
Status Public on Jun 01, 2022
Title Th1 sup
Sample type protein
 
Source name cultured DO.11 T cells
Organism Mus musculus
Characteristics pre vs post injection: Pre
cle disease first vs flare: N/A
th skewing: Th1
mouse cle skin disease score: N/A
Treatment protocol For drug treatments, Th0 unskewed DO.11 T cells were cultured in the presence of 100uM hydrochlorothiazide (HCTZ), 1uM 5' fluorouracil (FU), 10uM terbinafine (Ter), or vehicle control (Veh) and ova peptide pulsed APCs for a total of 10 days as for skewing growth protocol.
Growth protocol For cultures, DO.11 T cells were isolated from donor spleens, activated with ova-pulsed splenocytes, skewed with cytokines and antibodies towards Th0, Th1 or Th2, and expanded with IL-2 for a total of 10 days (see also Mande et al JCI 2018 PMID: 29889098). For ex vivo analysis, DO.11 T cells were enriched from digested lesional skin tissue using Miltenyi CD3 bead isolation kits. For serum analysis, mice were bled at first disease presentation (approximately week 4) or flare (approximately week 12).
Extracted molecule protein
Extraction protocol Cell culture supernatants or sera were isolated after centrifugation at 330 x g for 5 min and were stored at -70C until used in assays. Samples were prepared per the manufacturer's instructions (RayBiotech).
Label fluorescent antibody quantitative detection
Label protocol N/A
 
Hybridization protocol Binding was performed per RayBiotech manufacturer's protocol
Scan protocol Slides were shipped to RayBiotech manufacturer for their in-house Quantibody testing service
Description raw data file: slide 1.xlsx
Data processing Backgound median fluorescence intensity was subtracted from sample median fluorescence intensity
 
Submission date Oct 19, 2021
Last update date Jun 01, 2022
Contact name Jillian M Richmond
E-mail(s) jillian.richmond@umassmed.edu
Organization name UMass Chan Medical School
Department Dermatology
Street address 364 Plantation St
City Worcester
State/province Massachusetts
ZIP/Postal code 01605
Country USA
 
Platform ID GPL30876
Series (2)
GSE186095 Targeted protein expression analysis of skewed or drug-treated mouse T cells, and of serum from first disease vs flare in a model of Cutaneous Lupus Erythematosus
GSE186096 Gene expression and Targeted protein expression analysis of skewed or drug-treated mouse T cells, and of serum from first disease vs flare in a model of Cutaneous Lupus Erythematosus

Data table header descriptions
ID_REF
VALUE Median fluorescence intensity 532 minus background

Data table
ID_REF VALUE
1.1.POS1 79836
2.1.POS1 77654
3.1.POS1 75398
4.1.POS1 73912
5.2.POS2 35530
6.2.POS2 34124
7.2.POS2 43641
8.2.POS2 34579.5
9.3.IL-1b 647.5
10.3.IL-1b 495
11.3.IL-1b 520.5
12.3.IL-1b 719
13.4.IL-2 64087
14.4.IL-2 70185
15.4.IL-2 43975.5
16.4.IL-2 68974
17.5.IL-4 3643
18.5.IL-4 2592
19.5.IL-4 2671
20.5.IL-4 5006.5

Total number of rows: 80

Table truncated, full table size 1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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