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Sample GSM5631807 Query DataSets for GSM5631807
Status Public on Jun 01, 2022
Title Th2 sup GVH37
Sample type protein
 
Source name cultured DO.11 T cells
Organism Mus musculus
Characteristics pre vs post injection: Pre
cle disease first vs flare: N/A
th skewing: Th2
mouse cle skin disease score: N/A
Treatment protocol For drug treatments, Th0 unskewed DO.11 T cells were cultured in the presence of 100uM hydrochlorothiazide (HCTZ), 1uM 5' fluorouracil (FU), 10uM terbinafine (Ter), or vehicle control (Veh) and ova peptide pulsed APCs for a total of 10 days as for skewing growth protocol.
Growth protocol For cultures, DO.11 T cells were isolated from donor spleens, activated with ova-pulsed splenocytes, skewed with cytokines and antibodies towards Th0, Th1 or Th2, and expanded with IL-2 for a total of 10 days (see also Mande et al JCI 2018 PMID: 29889098). For ex vivo analysis, DO.11 T cells were enriched from digested lesional skin tissue using Miltenyi CD3 bead isolation kits. For serum analysis, mice were bled at first disease presentation (approximately week 4) or flare (approximately week 12).
Extracted molecule protein
Extraction protocol Cell culture supernatants or sera were isolated after centrifugation at 330 x g for 5 min and were stored at -70C until used in assays. Samples were prepared per the manufacturer's instructions (RayBiotech).
Label fluorescent antibody quantitative detection
Label protocol N/A
 
Hybridization protocol Binding was performed per RayBiotech manufacturer's protocol
Scan protocol Slides were shipped to RayBiotech manufacturer for their in-house Quantibody testing service
Description raw data file: slide 1.xlsx
Data processing Backgound median fluorescence intensity was subtracted from sample median fluorescence intensity
 
Submission date Oct 19, 2021
Last update date Jun 01, 2022
Contact name Jillian M Richmond
E-mail(s) jillian.richmond@umassmed.edu
Organization name UMass Chan Medical School
Department Dermatology
Street address 364 Plantation St
City Worcester
State/province Massachusetts
ZIP/Postal code 01605
Country USA
 
Platform ID GPL30876
Series (2)
GSE186095 Targeted protein expression analysis of skewed or drug-treated mouse T cells, and of serum from first disease vs flare in a model of Cutaneous Lupus Erythematosus
GSE186096 Gene expression and Targeted protein expression analysis of skewed or drug-treated mouse T cells, and of serum from first disease vs flare in a model of Cutaneous Lupus Erythematosus

Data table header descriptions
ID_REF
VALUE Median fluorescence intensity 532 minus background

Data table
ID_REF VALUE
1.1.POS1 70793
2.1.POS1 75229.5
3.1.POS1 77670
4.1.POS1 91490
5.2.POS2 28982.5
6.2.POS2 32042.5
7.2.POS2 27613
8.2.POS2 32538.5
9.3.IL-1b 517
10.3.IL-1b 388
11.3.IL-1b 487
12.3.IL-1b 601
13.4.IL-2 8533
14.4.IL-2 10515
15.4.IL-2 8904
16.4.IL-2 8536
17.5.IL-4 69155
18.5.IL-4 70619
19.5.IL-4 82958
20.5.IL-4 90987.5

Total number of rows: 80

Table truncated, full table size 1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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