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Sample GSM58 Query DataSets for GSM58
Status Public on Nov 09, 2001
Title 20t-8DLB
Sample type RNA
 
Channel 1
Source name 4 day old shoot
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name 8 day old leaf blade
Organism Zea mays
Extracted molecule total RNA
 
 
Description One of duplicate hybridizations.
 
Submission date Jun 12, 2001
Last update date May 27, 2005
Contact name Yangrae Cho
E-mail(s) yacho@sequence.stanford.edu
Phone 650-812-1976
Fax 650-812-1975
Organization name Stanford University
Department Biological Sciences
Lab V. Walbot
Street address 385 Serra Mall
City Stanford University
State/province CA
ZIP/Postal code 94305-8221
Country USA
 
Platform ID GPL12
Series (1)
GSE141 Gene-expression profile comparisons distinguish seven organs of maize

Data table header descriptions
ID_REF
Dia. Feature size
F635 Median Arithmetic median from channel 1
F635 Mean Arithmetic mean calculated as the raw signal divided by the surface area
F635 SD Standard deviation calculated from the mean signal (Channel 1)
B635 Median Arithmetic median of background from channel 1
B635 Mean Arithmetic mean of background (channel 1)
B635 SD Background standard deviation calculated for the mean background signal (channel 1)
F532 Median Arithmetic median from channel 2
F532 Mean Arithmetic mean calculated as the raw signal divided by the surface area (channel 2)
F532 SD Standard deviation calculated from the mean signal (Channel 2)
B532 Median Arithmetic median of background from channel 2
B532 Mean Arithmetic mean of background (channel 2)
B532 SD Background standard deviation calculated for the mean background signal (channel 2)
Rgn Rē Regression root square
F Pixels Area for intensity measurement of a feature
B Pixels Area for background intensity measurement
Flags crude quality:(-)value=bad flagged
VALUE log ratio of PRE_VALUE
PRE_VALUE The calculated ratio between (mean intensity of channel 1-median background)/(mean intensity of ch 2-median background of ch2)

Data table
ID_REF Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD Rgn Rē F Pixels B Pixels Flags VALUE PRE_VALUE
707001A02.x1 150 10072 9758 3151 82 96 55 10012 9945 3314 98 135 236 0.912 156 1019 0 -0.0074463 0.983
707002E03.y1 130 7027 7051 1884 80 94 54 5462 5385 1402 97 134 220 0.944 120 707 0 0.1199153 1.318
707002G11.y1 130 1706 2610 2665 78 97 119 1728 2111 1312 96 122 126 0.804 120 740 0 0.0993353 1.257
707003H06.x3 140 6226 6155 2211 80 95 74 5204 4913 1358 98 148 338 0.898 156 826 0 0.1010593 1.262
707004B03.y1 130 5878 6212 1850 81 95 90 2175 2289 788 98 137 306 0.857 120 690 0 0.4468483 2.798
707004G10.x1 140 13658 13708 3364 81 96 67 17163 17286 5855 100 138 186 0.93 156 797 0 -0.1007273 0.793
707001A04.x1 140 13268 13071 3878 79 91 55 9612 9422 3317 99 135 198 0.93 156 768 0 0.1442633 1.394
707002E04.y1 130 13164 13185 2587 78 89 48 11836 11637 2609 99 121 141 0.94 120 689 0 0.0553783 1.136
707003C01.x3 140 4039 4494 2441 79 92 74 20107 20174 7693 99 129 185 0.57 156 819 0 -0.6575773 0.220
707003H07.x2 140 3719 3836 2173 77 88 67 3180 3040 1403 97 120 136 0.888 156 791 0 0.1061913 1.277
707004H03.x2 140 21505 21712 7949 75 81 31 18121 18314 6379 97 112 73 0.943 156 810 0 0.0748163 1.188
707004A11.x2 120 9751 9674 3101 74 86 57 10095 9890 3374 96 115 110 0.94 120 606 0 -0.0087743 0.980
707001C09.x1 140 1874 2174 1824 73 91 128 2421 2395 913 94 123 192 0.712 156 823 0 -0.0395293 0.913
707002B05.y1 140 4100 4074 2270 73 85 99 3977 3704 1445 95 117 167 0.898 156 838 0 0.0449323 1.109
707003C02.x2 130 30544 29078 10467 73 81 44 9353 9352 3067 95 128 521 0.939 120 722 0 0.4959603 3.133
707003H08.x4 140 3546 4212 2561 72 80 36 2336 2699 1341 95 109 82 0.931 156 817 0 0.2013973 1.590
707004G04.x2 140 6687 6411 2151 69 77 38 6776 6362 2384 94 111 87 0.914 156 791 0 0.0051813 1.012
707004D11.y1 140 4200 4218 1346 68 74 30 3822 3574 1098 93 107 68 0.921 156 789 0 0.0762763 1.192
707001E11.x1 140 14061 13958 4480 69 329 3414 14674 14817 5628 96 446 4370 0.926 156 824 0 -0.0254883 0.943
707002F05.y1 130 10276 10334 2755 67 75 53 9029 9428 2742 92 107 137 0.949 120 806 0 0.0413933 1.100

Total number of rows: 5760

Table truncated, full table size 542 Kbytes.




Supplementary data files not provided
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