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Sample GSM5896816 Query DataSets for GSM5896816
Status Public on Feb 11, 2022
Title RB29 (3.5K BAC-CGH)
Sample type genomic
 
Source name retinoblastoma sample RB29
Organism Homo sapiens
Characteristics sample_id_for_geo: SAMPLE 21
tissue: retinoblastoma
Treatment protocol NA
Growth protocol NA
Extracted molecule genomic DNA
Extraction protocol For DNA extraction, samples were first incubated in a lysis buffer with proteinase K, recombinant. They were next incubated with RNAse A. DNA was then extracted using a standard phenol-chloroform protocol
Label Cy5
Label protocol Cy5
 
Hybridization protocol see platform's Manufacture protocol
Scan protocol ScanArray 4000 (Packard Bioscience)
Description 3.5K BAC CGH array data for retinoblastoma samples
Sample name: SAMPLE 52
Data processing HG19 version of the genome used, data processed with GLAD algorithm (Hupé et al, Bioinformatics, 2004)
Raw data matrix : raw log ratio values, Processed data matrix: Gap-smoothed log ratio values
 
Submission date Feb 11, 2022
Last update date Feb 11, 2022
Contact name Elodie chapeaublanc
E-mail(s) elodie.chapeaublanc@pasteur.fr
Organization name Institut Curie
Department UMR 144
Lab Equipe Radvanyi
Street address 26 rue d'ulm
City paris
ZIP/Postal code 75248
Country France
 
Platform ID GPL18861
Series (2)
GSE58784 Retinoblastoma genome variation profiling by genome tiling array
GSE58785 Pan-genomic study of primary human retinoblastoma samples

Data table header descriptions
ID_REF
VALUE Gap-smoothed log ratio values

Data table
ID_REF VALUE
zero -0.1297
1 -0.1297
2 -0.1297
3 -0.1297
4 -0.1297
5 -0.1297
6 -0.1297
7 -0.1297
8 -0.1297
9 -0.1297
10 -0.1297
11 -0.1297
12 -0.1297
13 -0.1297
14 -0.1297
15 -0.1297
16 -0.1297
17 -0.1297
18 -0.035
19 -0.035

Total number of rows: 3511

Table truncated, full table size 40 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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