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Sample GSM592344 Query DataSets for GSM592344
Status Public on Jan 01, 2012
Title Control-12 mo DC1T3
Sample type RNA
 
Source name Peripheral blood mononuclear cells
Organism Homo sapiens
Characteristics treatment: Control-12 mo
cell type: peripheral blood mononuclear cell
disease state: breast cancer
gender: female
Extracted molecule total RNA
Extraction protocol Human peripheral blood leukocytes were isolated and total RNA was extracted using Qiagen RNEasy.
Label biotin
Label protocol Standard Illumina beadarray probe synthesis for gene expression profiling (carried out in UCLA Southern California Genotyping Consortium Core Laboratory).
 
Hybridization protocol Standard Illumina beadarray hybridization protocol for gene expression profiling (carried out in UCLA Southern California Genotyping Consortium Core Laboratory).
Scan protocol Standard Illumina beadarray scan protocol for gene expression profiling (carried out in UCLA Southern California Genotyping Consortium Core Laboratory).
Description Illumina HT-12 v4 expression arrays
Data processing Gene expression values derived from Illumina GenomeStudio software were subject to quantile normalization, and log2-transformed for statistical analysis.
 
Submission date Sep 10, 2010
Last update date Aug 09, 2012
Contact name Steve Cole
Organization name UCLA School of Medicine
Department Medicine
Street address 11-934 Factor Bldg, UCLA
City Los Angeles
State/province CA
ZIP/Postal code 90095-1678
Country USA
 
Platform ID GPL10904
Series (1)
GSE24079 Differential gene expression in circulating leukocytes from breast cancer patients treated with Cognitive Behavioral Stress Management

Data table header descriptions
ID_REF
VALUE Log2 quantile normalized expression signal

Data table
ID_REF VALUE
7A5 7.0719
A1BG 7.1612
A1CF 7.2681
A26C3 7.1948
A2BP1 7.0943
A2LD1 7.5063
A2M 7.0471
A2ML1 7.1183
A3GALT2 7.0997
A4GALT 6.6715
A4GNT 7.5491
AAA1 6.9038
AAAS 7.312
AACS 7.6653
AACSL 7.7777
AADAC 7.1112
AADACL1 8.7366
AADACL2 7.0544
AADACL3 6.9444
AADACL4 7.3286

Total number of rows: 34589

Table truncated, full table size 511 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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