|
| Status |
Public on Jul 03, 2012 |
| Title |
ETV6/RUNX1-positive acute lymphoblastic leukemia, sample 2, leukemia [Affymetrix] |
| Sample type |
genomic |
| |
|
| Source name |
ETV6/RUNX1-positive acute lymphoblastic leukemia, sample 2, leukemia
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Acute lymphoblastic leukemia
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted from leukemic bone marrow at diagnosis or normal blood using standard methods. DNA quality and quantity was assessed using a Nanodrop Spectrophotometer.
|
| Label |
Biotin
|
| Label protocol |
The protocol provided by the manufacturer (Affymetrix) was used
|
| |
|
| Hybridization protocol |
The protocol provided by the manufacturer (Affymetrix) was used
|
| Scan protocol |
The chips were washed and stained according to the manufacturer's instructions and scanned using a GeneChip Scanner 3000
|
| Description |
Hybridized to Cytogenetics Whole-Genome 2.7M Array
|
| Data processing |
CEL files containing raw signal intensities were exported from the GeneChip Operating Software. The CEL files were imported into Chromosome Analysis Suite to produce copy number estimates (CYCHP-files).
|
| |
|
| Submission date |
Nov 03, 2010 |
| Last update date |
Jul 04, 2012 |
| Contact name |
Henrik Lilljebjörn |
| Organization name |
Lund University
|
| Department |
Dept of Clinical Genetics
|
| Street address |
Lund University Hospital
|
| City |
Lund |
| ZIP/Postal code |
22185 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL11157 |
| Series (2) |
| GSE25116 |
Affymetrix SNP-array data for 2 ETV6/RUNX1-positive Acute Lymphoblastic Leukemia samples and corresponding normal samples |
| GSE25117 |
Illumina and Affymetrix SNP-array data for 2 ETV6/RUNX1-positive Acute Lymphoblastic Leukemia samples and corresponding normal samples |
|
