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Sample GSM619300 Query DataSets for GSM619300
Status Public on Nov 11, 2010
Title Kidney Proximal Tubule, S2
Sample type SAGE
Anchor Sau3A
Tag Count 102216
Tag Length 15
 
Source name microdissected proximal tubule, S2 from kidney
Organism Mus musculus
Characteristics strain: CD1
gender: male
age: 10 weeks
tissue: kidney proximal tubule, S2
Extracted molecule polyA RNA
Extraction protocol Dynabeads mRNA direct kit (Dynal) was used to extract mRNA.
 
Description Library was obtained from microdissected Proximal tubule S2 from male CD1 mice under control condition. The library was generated using Sau3AI as anchoring enzyme and MmeI as tagging enzyme.The SAGE Adaptation method for Downsized Extracts was used to generate the library. Data were provided after curation as described in the publication.
Data processing Automatic tag detection and counting was performed with SADELAB (CEA Saclay, France), a web-based integrated platform dedicated to the management of SAGE project.
 
Submission date Nov 09, 2010
Last update date Nov 10, 2010
Contact name Lydie Cheval
E-mail(s) lydie.cheval@crc.jussieu.fr
Phone (33) 1 55 42 78 60
Fax (33) 1 46 33 41 72
Organization name Institut des Cordeliers
Lab UMR 872
Street address 15 rue de l'├ęcole de M├ędecine
City Paris
ZIP/Postal code 75270
Country France
 
Platform ID GPL5119
Series (1)
GSE25223 Atlas of gene expression in the mouse kidney

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
CTGGATGAGAAATGC 15249 149184.08
ACCAGGACCTTGAAA 4155 40649.21
TGCTTCAATAATTTA 2959 28948.50
AACTTATACATCTTC 1541 15075.92
TTTATAATTTGAGAG 1234 12072.47
TTAAAAAAAAAAAAA 1096 10722.39
TCATTATATAAAATA 869 8501.60
ACTTCCTCGTTCTTT 815 7973.31
ATGGCCCAGACCTGA 760 7435.24
TGACTCCCTCTTCTG 682 6672.15
AACAAATCTCCTAGG 649 6349.30
TGTTTCCCCTGCCCA 635 6212.33
GCTGGACAGGTGGCA 598 5850.36
CTTGGGGACGTCTTT 519 5077.48
AGGAATCCAGGCCAG 467 4568.76
GTTCTCACCCCGCAG 459 4490.49
TGATGCCCTCTTCTG 434 4245.91
ATGGACTTCACGCCA 390 3815.45
AACATTCCTTATTGT 381 3727.40
CTCATCAATAAATGG 381 3727.40

Total number of rows: 18100

Table truncated, full table size 414 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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