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Sample GSM619305 Query DataSets for GSM619305
Status Public on Nov 11, 2010
Title Kidney Proximal Tubule, S3
Sample type SAGE
Anchor Sau3A
Tag Count 75316
Tag Length 15
 
Source name microdissected proximal tubule, S3 from kidney
Organism Mus musculus
Characteristics strain: CD1
gender: male
age: 10 weeks
tissue: kidney proximal tubule, S3
Extracted molecule polyA RNA
Extraction protocol Dynabeads mRNA direct kit (Dynal) was used to extract mRNA.
 
Description Library was obtained from microdissected Proximal tubule S3 from male CD1 mice under control condition. The library was generated using Sau3AI as anchoring enzyme and MmeI as tagging enzyme.The SAGE Adaptation method for Downsized Extracts was used to generate the library. Data were provided after curation as described in the publication.
Data processing Automatic tag detection and counting was performed with SADELAB (CEA Saclay, France), a web-based integrated platform dedicated to the management of SAGE project.
 
Submission date Nov 09, 2010
Last update date Nov 10, 2010
Contact name Lydie Cheval
E-mail(s) lydie.cheval@crc.jussieu.fr
Phone (33) 1 55 42 78 60
Fax (33) 1 46 33 41 72
Organization name Institut des Cordeliers
Lab UMR 872
Street address 15 rue de l'├ęcole de M├ędecine
City Paris
ZIP/Postal code 75270
Country France
 
Platform ID GPL5119
Series (1)
GSE25223 Atlas of gene expression in the mouse kidney

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
CTGGATGAGAAATGC 11563 153526.48
ACCAGGACCTTGAAA 2788 37017.37
AACTTATACATCTTC 1844 24483.51
TGCTTCAATAATTTA 1582 21004.83
TTTATAATTTGAGAG 1435 19053.06
AACAAATCTCCTAGG 1174 15587.66
TGTTTCCCCTGCCCA 867 11511.50
ACTTCCTCGTTCTTT 636 8444.42
CTTGGGGACGTCTTT 632 8391.31
ATGGACTTCACGCCA 615 8165.60
ATGGCCCAGACCTGA 484 6426.26
TGACTCCCTCTTCTG 484 6426.26
TCATTATATAAAATA 451 5988.10
TTAAAAAAAAAAAAA 415 5510.12
GCTGGACAGGTGGCA 343 4554.15
AACATTCCTTATTGT 303 4023.05
AAACTTTACCATTAT 278 3691.11
CTCATCAATAAATGG 278 3691.11
TGATGCCCTCTTCTG 265 3518.51
AAGAGAGCAGATGAG 253 3359.18

Total number of rows: 12524

Table truncated, full table size 295 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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