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Sample GSM62 Query DataSets for GSM62
Status Public on Nov 09, 2001
Title 222T-EMBRYO
Sample type RNA
 
Channel 1
Source name 4 day old shoot
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name 2 week old embryo
Organism Zea mays
Extracted molecule total RNA
 
 
Description One of duplicate hybridizations.
 
Submission date Jun 12, 2001
Last update date May 27, 2005
Contact name Yangrae Cho
E-mail(s) yacho@sequence.stanford.edu
Phone 650-812-1976
Fax 650-812-1975
Organization name Stanford University
Department Biological Sciences
Lab V. Walbot
Street address 385 Serra Mall
City Stanford University
State/province CA
ZIP/Postal code 94305-8221
Country USA
 
Platform ID GPL12
Series (1)
GSE141 Gene-expression profile comparisons distinguish seven organs of maize

Data table header descriptions
ID_REF
Dia. Feature size
F635 Median Arithmetic median from channel 1
F635 Mean Arithmetic mean calculated as the raw signal divided by the surface area
F635 SD Standard deviation calculated from the mean signal (Channel 1)
B635 Median Arithmetic median of background from channel 1
B635 Mean Arithmetic mean of background (channel 1)
B635 SD Background standard deviation calculated for the mean background signal (channel 1)
F532 Median Arithmetic median from channel 2
F532 Mean Arithmetic mean calculated as the raw signal divided by the surface area (channel 2)
F532 SD Standard deviation calculated from the mean signal (Channel 2)
B532 Median Arithmetic median of background from channel 2
B532 Mean Arithmetic mean of background (channel 2)
B532 SD Background standard deviation calculated for the mean background signal (channel 2)
Rgn Rē Regression root square
F Pixels Area for intensity measurement of a feature
B Pixels Area for background intensity measurement
Flags crude quality:(-)value=bad flagged
VALUE log ratio of PRE_VALUE
PRE_VALUE The calculated ratio between (mean intensity of channel 1-median background)/(mean intensity of ch 2-median background of ch2)

Data table
ID_REF Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD Rgn Rē F Pixels B Pixels Flags VALUE PRE_VALUE
707001A02.x1 130 6384 6069 1893 78 82 28 6627 6594 2400 104 109 37 0.885 120 798 0 -0.0347983 0.923
707002E03.y1 120 5854 6126 1802 76 81 28 3617 3538 1165 101 108 39 0.929 120 665 0 0.2455133 1.760
707002G11.y1 120 1416 1538 777 75 78 16 983 1010 419 92 95 27 0.84 120 665 0 0.2024883 1.594
707003H06.x3 120 5844 5756 1560 78 80 20 3582 3659 701 90 92 23 0.927 120 652 0 0.2016703 1.591
707004B03.y1 130 1599 1913 1016 79 84 23 1448 1589 693 92 94 26 0.831 120 742 0 0.0881363 1.225
707004G10.x1 130 11255 11913 3868 80 85 30 9383 9985 3354 94 96 27 0.896 120 742 0 0.0777313 1.196
707001A04.x1 120 4570 4641 1410 81 86 30 7730 7859 2556 94 98 33 0.905 120 680 0 -0.2313623 0.587
707002E04.y1 120 8787 8966 2854 82 87 23 8591 8580 2516 92 97 36 0.929 120 665 0 0.0199473 1.047
707003C01.x3 120 31746 30763 10843 83 90 35 1979 2014 601 88 92 26 0.706 120 641 0 1.2021893 15.929
707003H07.x2 140 1987 3649 8945 87 96 58 1747 2415 5499 88 92 23 0.515 156 820 0 0.1849753 1.531
707004H03.x2 130 11995 13213 4713 89 111 252 9547 9782 3006 92 98 38 0.912 120 722 0 0.1316193 1.354
707004A11.x2 120 8910 8752 2908 88 96 49 5743 5686 1865 95 100 34 0.935 120 680 0 0.1903323 1.550
707001C09.x1 130 2064 2318 1438 85 88 24 1389 1509 785 100 103 24 0.909 120 742 0 0.2000293 1.585
707002B05.y1 130 4364 4489 1414 85 89 23 4114 3960 802 103 106 22 0.901 120 726 0 0.0576663 1.142
707003C02.x2 130 4164 4177 1595 82 85 18 9593 9550 3708 105 109 25 0.871 120 726 0 -0.3625103 0.434
707003H08.x4 120 1722 1963 1079 80 96 258 1927 2015 801 108 109 22 0.805 120 664 0 -0.0056833 0.987
707004G04.x2 120 6183 5838 1800 79 85 78 4498 4351 1078 105 106 16 0.926 120 665 0 0.1322603 1.356
707004D11.y1 130 4174 4155 1381 80 83 19 3758 3714 682 103 105 21 0.891 120 742 0 0.0523093 1.128
707001E11.x1 130 13857 13875 4453 83 99 156 10056 10117 3208 101 111 95 0.898 120 770 0 0.1389343 1.377
707002F05.y1 130 9524 9841 2829 83 97 150 5834 6106 1753 99 108 88 0.937 120 836 0 0.2105863 1.624

Total number of rows: 5760

Table truncated, full table size 544 Kbytes.




Supplementary data files not provided
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