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Sample GSM620799 Query DataSets for GSM620799
Status Public on Nov 11, 2010
Title Kidney Connecting Tubule (CNT)
Sample type SAGE
Anchor Sau3A
Tag Count 68600
Tag Length 15
 
Source name microdissected connecting tubule from kidney
Organism Mus musculus
Characteristics strain: CD1
gender: male
age: 10 weeks
tissue: kidney connecting tubule
Extracted molecule polyA RNA
Extraction protocol Dynabeads mRNA direct kit (Dynal) was used to extract mRNA.
 
Description Library was obtained from 1000 microdissected Connecting Tubule from male CD1 mice under control condition. The library was generated using Sau3AI as anchoring enzyme and MmeI as tagging enzyme.The SAGE Adaptation method for Downsized Extracts was used to generate the library. Data were provided after curation as described in the publication.
Data processing Automatic tag detection and counting was performed with SADELAB (CEA Saclay, France), a web-based integrated platform dedicated to the management of SAGE project.
 
Submission date Nov 09, 2010
Last update date Nov 10, 2010
Contact name Lydie Cheval
E-mail(s) lydie.cheval@crc.jussieu.fr
Phone (33) 1 55 42 78 60
Fax (33) 1 46 33 41 72
Organization name Institut des Cordeliers
Lab UMR 872
Street address 15 rue de l'├ęcole de M├ędecine
City Paris
ZIP/Postal code 75270
Country France
 
Platform ID GPL5119
Series (1)
GSE25223 Atlas of gene expression in the mouse kidney

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
TTTATAATTTGAGAG 2980 43440.23
AACTTATACATCTTC 1850 26967.93
TGCTTCAATAATTTA 1362 19854.23
AACAAATCTCCTAGG 1279 18644.31
TGTGATGGTGTTCTA 994 14489.80
CGGACCAGCTCTCCA 893 13017.49
TTGTGTCAGTCAGGT 580 8454.81
TAACCATAGCTTTAT 428 6239.07
AACATTCCTTATTGT 341 4970.85
TGACTCCCTCTTCTG 340 4956.27
GTTCTCACCCCGCAG 330 4810.50
GTGGCAGTGGGGAGA 308 4489.80
CACCAAACCCTAAAA 290 4227.41
AGTAGTCGTGCCAGC 287 4183.67
TGATGCCCTCTTCTG 287 4183.67
AAACAACCCAACAGG 274 3994.17
TCTCCATATCAAGCG 264 3848.40
CCCCTCCCCCCAGTG 250 3644.31
TTCCATCCCTTCTGC 237 3454.81
AAACTTTACCATTAT 213 3104.96

Total number of rows: 16202

Table truncated, full table size 382 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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