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Sample GSM620800 Query DataSets for GSM620800
Status Public on Nov 11, 2010
Title Kidney Cortical Collecting Duct
Sample type SAGE
Anchor Sau3A
Tag Count 74389
Tag Length 15
 
Source name microdissected cortical collecting duct from kidney
Organism Mus musculus
Characteristics strain: CD1
gender: male
age: 10 weeks
tissue: kidney cortical collecting duct
Extracted molecule polyA RNA
Extraction protocol Dynabeads mRNA direct kit (Dynal) was used to extract mRNA.
 
Description Library was obtained from 1000 microdissected Cortical Collecting Duct from male CD1 mice under control condition. The library was generated using Sau3AI as anchoring enzyme and MmeI as tagging enzyme.The SAGE Adaptation method for Downsized Extracts was used to generate the library. Data were provided after curation as described in the publication.
Data processing Automatic tag detection and counting was performed with SADELAB (CEA Saclay, France), a web-based integrated platform dedicated to the management of SAGE project.
 
Submission date Nov 09, 2010
Last update date Nov 10, 2010
Contact name Lydie Cheval
E-mail(s) lydie.cheval@crc.jussieu.fr
Phone (33) 1 55 42 78 60
Fax (33) 1 46 33 41 72
Organization name Institut des Cordeliers
Lab UMR 872
Street address 15 rue de l'├ęcole de M├ędecine
City Paris
ZIP/Postal code 75270
Country France
 
Platform ID GPL5119
Series (1)
GSE25223 Atlas of gene expression in the mouse kidney

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AACTTATACATCTTC 2564 34467.46
GTGGCAGTGGGGAGA 2118 28471.95
AACAAATCTCCTAGG 2069 27813.25
TTTATAATTTGAGAG 1960 26347.98
AAACTTTACCATTAT 679 9127.69
GCCTGGAGAAATGAC 636 8549.65
TGCTTCAATAATTTA 503 6761.75
CAAGCAGCCCCAGCT 413 5551.90
GCTTTCAGCAATGGA 407 5471.24
GTTCTCACCCCGCAG 403 5417.47
TGAGTGGGCAGCAGC 361 4852.87
AAGTTTAAATGACTG 348 4678.11
AAACAACCCAACAGG 303 4073.18
TGACTCCCTCTTCTG 271 3643.01
TTTGCCGGCAAGCAG 270 3629.57
ACTCTGGAGTTCAGC 258 3468.25
GCTGGACAGGTGGCA 252 3387.60
ACGAGTTCGAGGCCA 242 3253.17
CACCAAACCCTAAAA 237 3185.95
AAATTCCCACTGCCC 228 3064.97

Total number of rows: 17588

Table truncated, full table size 414 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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