|
| Status |
Public on Oct 12, 2022 |
| Title |
RNA-seq of adult Amphiouxus lanceolatum epidermis [Bla_Epidermis_c] |
| Sample type |
SRA |
| |
|
| Source name |
Adult epidermis
|
| Organism |
Branchiostoma lanceolatum |
| Characteristics |
tissue: Epidermis
genome build: BraLan3
gtf: BraLan3 GTF (enriched from https://doi.org/10.1101/2022.01.18.476203)
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Rneasy plus Mini Kit (Qiagen)
polyA-selected stranded RNA-seq; RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
Pooled epidermis from adult individuals
|
| Data processing |
Estimated counts and TPMs were computed by Kallisto (v0.44.0)
Supplementary files format and content: Tab-delimited file with length, effective length, estimated counts and transcript per million (TPM) for all species protein coding genes in the relative GTF
|
| |
|
| Submission date |
Jun 05, 2022 |
| Last update date |
Oct 12, 2022 |
| Contact name |
Federica Mantica |
| E-mail(s) |
federica.mantica93@gmail.com
|
| Organization name |
CRG
|
| Street address |
Dr. Aiguader 88
|
| City |
Barcelona |
| ZIP/Postal code |
08003 |
| Country |
Spain |
| |
|
| Platform ID |
GPL24206 |
| Series (1) |
| GSE205498 |
Transcriptomic evolution across bilaterian tissues |
|
| Relations |
| BioSample |
SAMN28868484 |
| SRA |
SRX15600895 |
