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Sample GSM62328 Query DataSets for GSM62328
Status Public on Feb 21, 2006
Title H1993
Sample type genomic
 
Channel 1
Source name H1993 adenocarcinoma cell line
Organism Homo sapiens
Characteristics ATTC catalogue number CRL-5909
Extracted molecule genomic DNA
Label cy5
 
Channel 2
Source name normal male
Organism Homo sapiens
Characteristics NOVAGEN POOLED NORMAL MALE REFERENCE GENOMIC DNA
Extracted molecule genomic DNA
Label cy3
 
 
Description cy 5 = sample cy 3= reference
Data processing NONE
 
Submission date Jun 27, 2005
Last update date Feb 21, 2006
Contact name William Wallace Lockwood
E-mail(s) william.lockwood@nih.gov
Organization name National Human Genome Research Institute
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2043
Series (1)
GSE2922 High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Median Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Median Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy3/Cy5
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy5/Cy3) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 22845.8 12383.91 1210 2513 21635.8 9870.91 424.081 191.8878 1.013892 0.9862962 0.01990417 -0.01990709
2 18133.22 8657.14 1283 2527 16850.22 6130.14 277.4691 137.271 1.271484 0.786481 0.3465133 -0.3465162
3 25891.17 14144.67 1310.5 2510.5 24580.67 11634.17 399.241 239.3462 0.9773142 1.02321 -0.0331057 0.03310278
4 26047.63 14054.25 1291.5 2484 24756.13 11570.25 384.706 241.8393 0.9897282 1.010376 -0.01489565 0.01489273
5 18841.28 9516.54 1273 2469 17568.28 7047.54 260.3374 134.9755 1.153103 0.8672236 0.2055213 -0.2055242
6 25352.47 9958.58 1324 2467 24028.47 7491.58 353.973 164.2288 1.483641 0.674016 0.5691424 -0.5691453
7 28516.17 17019.66 1333 2478 27183.17 14541.66 390.152 278.8403 0.8646933 1.156477 -0.2097395 0.2097366
8 20344.14 12999.6 1330 2502 19014.14 10497.6 275.8271 190.5236 0.8378432 1.193538 -0.2552477 0.2552448
9 22606.99 11323.98 1319 2492 21287.99 8831.98 327.417 180.7594 1.114944 0.8969046 0.1569706 -0.1569736
10 26698.89 23190.07 1365 2522 25333.89 20668.07 143.2512 187.3879 0.5669934 1.763685 -0.8185961 0.8185932
11 24009.05 9469 1321.5 2504 22687.55 6965 224.0053 84.3932 1.506755 0.6636767 0.5914447 -0.5914475
12 22180.12 9101.06 1302 2521.5 20878.12 6579.56 163.2195 90.7953 1.467813 0.6812845 0.5536678 -0.5536707
13 28633.94 12615.73 1360 2537.5 27273.94 10078.23 83.8399 67.4868 1.251814 0.7988394 0.3240197 -0.3240226
14 20278.54 11861.06 1791 2690 18487.54 9171.06 68.3655 68.5776 0.9324716 1.072417 -0.1008683 0.1008654
15 26617 15150.24 1818 2696 24799 12454.24 114.8823 101.4326 0.9210706 1.085691 -0.1186164 0.1186135
16 14515.9 11999.94 1503 2544.5 13012.9 9455.44 65.4406 88.6726 0.6366024 1.570836 -0.6515356 0.6515327
17 21419.49 10768.78 1536 2526 19883.49 8242.78 140.5189 108.081 1.115822 0.8961984 0.1581071 -0.15811
18 34868.6 19946.89 2537 33359.6 17409.89 234.9144 223.4851 0.8863423 1.12823 -0.1740641 0.1740612
19 15889.96 8300.27 1601 2606 14288.96 5694.27 52.032 45.6083 1.160751 0.8615099 0.215058 -0.2150609
20 29544.52 15020.99 1640 2629.5 27904.52 12391.49 95.6643 84.9457 1.041663 0.9600016 0.05888835 -0.05889127

Total number of rows: 104544

Table truncated, full table size 11039 Kbytes.




Supplementary data files not provided
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