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Sample GSM62333 Query DataSets for GSM62333
Status Public on Feb 21, 2006
Title HCC78
Sample type genomic
 
Channel 1
Source name HCC78 adenocarcinoma cell line
Organism Homo sapiens
Characteristics HCC78
Extracted molecule genomic DNA
Label cy5
 
Channel 2
Source name normal male
Organism Homo sapiens
Characteristics NOVAGEN POOLED NORMAL MALE REFERENCE GENOMIC DNA
Extracted molecule genomic DNA
Label cy3
 
 
Description cy 5 = sample cy 3= reference
Data processing NONE
 
Submission date Jun 28, 2005
Last update date Feb 21, 2006
Contact name William Wallace Lockwood
E-mail(s) william.lockwood@nih.gov
Organization name National Human Genome Research Institute
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2043
Series (1)
GSE2922 High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Median Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Median Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy3/Cy5
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy3/Cy5) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 18396.3 10561.17 1262.5 2495.5 17133.8 8065.67 434.959 137.4549 0.9869791 1.013187 -0.0189085 0.0189005
2 14416.17 8368.43 1311 2523 13105.17 5845.43 247.6247 96.2412 1.041648 0.9600115 0.05886829 -0.05887629
3 22951.26 13808.23 1372.5 2589 21578.76 11219.23 420.59 197.8328 0.893631 1.119024 -0.1622488 0.1622408
4 19709.27 16230.98 1333 2543 18376.27 13687.98 305.6299 225.5782 0.6237531 1.603189 -0.680953 0.680945
5 14283.27 8176.95 1269 2481 13014.27 5695.95 263.2705 154.9807 1.061569 0.9419969 0.08619786 -0.08620586
6 18995.06 9659.16 1266 2480 17729.06 7179.16 282.6361 183.9273 1.147379 0.8715466 0.1983422 -0.1983502
7 21037.45 16818.06 1268 2454 19769.45 14364.06 321.475 236.4741 0.6394582 1.563815 -0.6450781 0.6450701
8 14633.49 8468.16 1240 2379 13393.49 6089.16 225.1445 139.1897 1.021953 0.9785128 0.0313294 -0.0313374
9 16745.21 11037.62 1244 2413 15501.21 8624.62 245.3979 194.982 0.8350646 1.197505 -0.2600402 0.2600322
10 19299.79 12738.93 1279 2447.5 18020.79 10291.43 283.9239 228.7988 0.8135658 1.22915 -0.2976691 0.297661
11 15272.3 9056.01 1325.5 2472 13946.8 6584.01 321.541 189.246 0.9841893 1.016059 -0.02299225 0.02298425
12 17430.94 9428.79 1331 2515 16099.94 6913.79 302.663 140.9489 1.081938 0.9242622 0.1136179 -0.1136259
13 21837.7 12144.31 1393.5 2583 20444.2 9561.31 296.6183 137.6193 0.9934531 1.006585 -0.00947618 0.00946818
14 16425.1 9422.02 1396 2559 15029.1 6863.02 189.9712 88.3812 1.017447 0.9828464 0.02495421 -0.0249622
15 20913.37 10339.45 1331 2504.5 19582.37 7834.95 236.0625 161.6864 1.161244 0.8611407 0.2156712 -0.2156792
16 13188.84 10599.87 1271 2492.5 11917.84 8107.37 168.3374 172.421 0.6829871 1.464148 -0.5500699 0.5500619
17 19360.89 11211.24 1251.5 2488 18109.39 8723.24 415.721 155.1065 0.9645404 1.036757 -0.05208635 0.05207835
18 27827.12 22005.58 1260.5 2465.5 26566.62 19540.08 782.249 503.513 0.6316909 1.583044 -0.6627092 0.6627012
19 13171.44 7786.52 1251.5 2483 11919.94 5303.52 286.6564 140.0319 1.044249 0.9576208 0.06246555 -0.06247355
20 21446.15 13449.38 1254 2483.5 20192.15 10965.88 445.884 239.2062 0.8555267 1.168864 -0.2251152 0.2251072

Total number of rows: 104544

Table truncated, full table size 10982 Kbytes.




Supplementary data files not provided
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