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Sample GSM62334 Query DataSets for GSM62334
Status Public on Feb 21, 2006
Title HCC193
Sample type genomic
 
Channel 1
Source name HCC193 adenocarcinoma cell line
Organism Homo sapiens
Characteristics HCC193
Extracted molecule genomic DNA
Label cy5
 
Channel 2
Source name normal male
Organism Homo sapiens
Characteristics NOVAGEN POOLED NORMAL MALE REFERENCE GENOMIC DNA

Extracted molecule genomic DNA
Label cy3
 
 
Description cy 5 = sample cy 3= reference
Data processing NONE
 
Submission date Jun 28, 2005
Last update date Feb 21, 2006
Contact name William Wallace Lockwood
E-mail(s) william.lockwood@nih.gov
Organization name National Human Genome Research Institute
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2043
Series (1)
GSE2922 High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Median Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Median Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy3/Cy5
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy3/Cy5) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 18735.02 9645.58 1064 2432 17671.02 7213.58 504.314 201.1562 0.8072954 1.238694 -0.3088315 0.3088196
2 14467.72 6200.98 1101 2443 13366.72 3757.98 348.112 120.7421 1.172175 0.853108 0.2291879 -0.2291998
3 24394.84 12993.58 1148.5 2445 23246.34 10548.58 318.411 220.1826 0.7262431 1.376938 -0.4614753 0.4614634
4 17803.2 9604.88 1157 2443 16646.2 7161.88 182.8344 143.5929 0.7659662 1.30553 -0.3846475 0.3846355
5 14570.69 7041.19 1122 2418 13448.69 4623.19 133.9421 85.6513 0.9586492 1.043126 -0.06092511 0.06091317
6 23488.02 8967.1 1129 2427 22359.02 6540.1 215.2957 130.1832 1.126653 0.8875773 0.1720433 -0.1720553
7 23079.49 10383.02 1121 2418 21958.49 7965.02 640.794 294.2376 0.908525 1.100676 -0.1384017 0.1383898
8 17639.79 11236.39 1130.5 2443 16509.29 8793.39 543.652 215.7356 0.6187196 1.616228 -0.6926423 0.6926304
9 18292.46 8696.3 1156 2470 17136.46 6226.3 443.778 187.7692 0.9070104 1.102514 -0.1408089 0.140797
10 20694.78 12232.69 1171 2478 19523.78 9754.69 452.312 270.5344 0.6595871 1.516088 -0.6003649 0.6003529
11 20198.84 11519.1 1178 2477 19020.84 9042.1 457.639 252.7736 0.6932375 1.442495 -0.5285785 0.5285665
12 20262.98 10278.67 1164 2491 19098.98 7787.67 453.611 188.9352 0.8082095 1.237293 -0.3071986 0.3071867
13 31265.72 11388.14 1181 2479.5 30084.72 8908.64 951.476 209.0676 1.112899 0.8985465 0.154323 -0.1543349
14 20440.24 9239.88 1164 2458 19276.24 6781.88 490.788 266.3165 0.9366859 1.067585 -0.09436272 0.09435079
15 22763.97 8647.6 1127 2459.5 21636.97 6188.1 407.784 234.4419 1.152286 0.8678328 0.2044991 -0.2045111
16 11777.04 10740.53 1103 2440.5 10674.04 8300.03 65.0191 154.3613 0.4238093 2.359532 -1.238513 1.238501
17 18960.07 9331.29 1103 2415 17857.07 6916.29 412.402 149.9449 0.850861 1.17527 -0.2330047 0.2329927
18 29307.9 14114.54 1127.5 2416 28180.4 11698.54 518.065 343.69 0.7938477 1.259677 -0.3330658 0.3330539
19 14824.69 6956.28 1119.5 2409.5 13705.19 4546.78 285.668 149.2617 0.9933506 1.006686 -0.00962506 0.009613123
20 23514.85 11325.57 1129 2414 22385.85 8911.57 394.996 258.9288 0.8278292 1.207969 -0.272595 0.2725831

Total number of rows: 104544

Table truncated, full table size 10971 Kbytes.




Supplementary data files not provided

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