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Sample GSM62968 Query DataSets for GSM62968
Status Public on Feb 21, 2006
Title HCC15
Sample type genomic
 
Channel 1
Source name HCC15 Squamous Cell Carcinoma Cell Line
Organism Homo sapiens
Characteristics HCC15 Squamous Cell Carcinoma Cell Line
Extracted molecule genomic DNA
Label Cyanine 5
 
Channel 2
Source name Male genomic
Organism Homo sapiens
Characteristics NOVAGEN POOLED MALE REFERENCE GENOMIC DNA
Extracted molecule genomic DNA
Label cyanine 3
 
 
Description cyanine 5 = sample
cyanine 3 = reference
Data processing N/A
 
Submission date Jul 04, 2005
Last update date Feb 21, 2006
Contact name William Wallace Lockwood
E-mail(s) william.lockwood@nih.gov
Organization name National Human Genome Research Institute
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2043
Series (1)
GSE2922 High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Median Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Median Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy5/Cy3
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy5/Cy3) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 11042.83 6329.65 756 2629 10286.83 3700.65 286.6799 95.3507 1.061373 0.9421742 0.08593141 -0.08593421
2 8074.51 5218.56 805 2639 7269.51 2579.561 199.0318 60.1788 1.07603 0.9293401 0.1057186 -0.1057214
3 12940.92 7285.54 826 2682 12114.92 4603.54 459.218 118.8056 1.004832 0.9951897 0.00695383 -0.006956623
4 11815.79 6511.45 822.5 2655 10993.29 3856.45 488.153 90.066 1.088441 0.9187433 0.1222634 -0.1222662
5 8966.32 5449.89 811 2646 8155.32 2803.89 321.147 76.0005 1.110567 0.9004389 0.1512969 -0.1512996
6 13605.34 7154.01 792 2658.5 12813.34 4495.51 327.049 129.6134 1.088299 0.9188634 0.122075 -0.1220777
7 12977.01 7615.43 1644.5 2948.5 11332.51 4666.93 9.72235 9.98704 0.9271708 1.078548 -0.109093 0.1090902
8 10782.61 6447.44 3453 3721 7329.61 2726.439 15.34321 11.20407 1.026479 0.9742022 0.0377041 -0.0377069
9 12524.42 6579.27 3713.5 3904 8810.92 2675.268 47.064 37.2132 1.257531 0.7952074 0.3305941 -0.3305969
10 16033.43 8063.39 3557.5 3828 12475.93 4235.39 44.7792 32.3134 1.124722 0.8891071 0.1695682 -0.169571
11 11056.95 6573.93 1470 2962 9586.95 3611.93 7.7956 7.04353 1.01346 0.9867169 0.01928913 -0.01929192
12 11912.15 7060.85 805 2639 11107.15 4421.85 319.151 106.1982 0.9590983 1.042644 -0.06024934 0.06024654
13 13133.05 7348.76 780 2648 12353.05 4700.76 331.793 132.4939 1.003393 0.9966164 0.004886979 -0.004889772
14 11407.45 6479.77 785 2653 10622.45 3826.77 276.8617 111.5553 1.059882 0.9434992 0.08390402 -0.08390681
15 14437.24 7788.34 788 2639 13649.24 5149.34 384.606 149.79 1.012097 0.9880462 0.01734685 -0.01734965
16 10297.25 5652.92 787 2646 9510.25 3006.916 252.9756 75.9834 1.207635 0.8280628 0.272185 -0.2721878
17 11182.81 6478.31 799 2652.5 10383.81 3825.81 249.2164 78.2715 1.036332 0.9649404 0.05148553 -0.05148832
18 18006.94 9424.67 803 2657 17203.94 6767.67 397.204 159.8262 0.9706299 1.030257 -0.04300679 0.04300399
19 9674.69 5713.45 805 2650.5 8869.69 3062.949 158.9865 56.9583 1.10569 0.9044108 0.1449472 -0.14495
20 12300.72 7269.22 791 2650.5 11509.72 4618.72 240.6658 92.8886 0.9514986 1.050972 -0.07172657 0.07172377

Total number of rows: 104544

Table truncated, full table size 10888 Kbytes.




Supplementary data files not provided
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