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Sample GSM63349 Query DataSets for GSM63349
Status Public on Feb 22, 2006
Title H3255
Sample type genomic
 
Channel 1
Source name H3255 Adenocarcinoma Cell Line
Organism Homo sapiens
Characteristics H3255 Adenocarcinoma Cell Line
Extracted molecule genomic DNA
Label Cyanine 3
 
Channel 2
Source name Male genomic
Organism Homo sapiens
Characteristics NOVAGEN POOLED MALE REFERENCE GENOMIC DNA
Extracted molecule genomic DNA
Label cyanine 5
 
 
Description cyanine 3 = sample
cyanine 5 = reference
Data processing N/A
 
Submission date Jul 10, 2005
Last update date Feb 22, 2006
Contact name William Wallace Lockwood
E-mail(s) william.lockwood@nih.gov
Organization name National Human Genome Research Institute
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2616
Series (1)
GSE2922 High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Median Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Median Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5 Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy5/Cy3
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy5/Cy3) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 4946.74 3179.62 1196 1787 3750.74 1392.621 116.9591 38.9165 1.027281 0.9731085 0.03883077 -0.03932753
2 6258.79 3425.38 1247 1807 5011.79 1618.381 72.2628 41.6867 1.181185 0.8463159 0.240235 -0.2407317
3 4383.73 2933.622 1229 1799 3154.733 1134.622 49.5446 22.68806 1.060515 0.9426132 0.08476544 -0.0852622
4 4280.04 3198.13 1215.5 1791.5 3064.543 1406.63 65.9296 27.73283 0.8309816 1.202982 -0.2671115 0.2666148
5 4674.9 3071.686 1257 1808 3417.9 1263.686 75.007 32.4899 1.031633 0.9690033 0.04492975 -0.04542651
6 5237.09 3252.9 1269 1820 3968.09 1432.901 99.3897 45.522 1.05626 0.946411 0.07896448 -0.07946124
7 5657.15 3412.23 1276.5 1810 4380.65 1602.232 89.385 48.7337 1.042842 0.9585877 0.0605209 -0.06101766
8 5068.7 3159.978 1277.5 1811.5 3791.2 1348.478 33.8271 37.9316 1.072354 0.9322067 0.1007813 -0.1012781
9 5985.01 3472.73 1285 1826 4700.01 1646.726 34.7397 35.414 1.088637 0.9182637 0.1225227 -0.1230195
10 5646.2 3256.14 1297 1807.5 4349.2 1448.641 62.9869 46.7746 1.145128 0.8729639 0.1955094 -0.1960062
11 4519.15 3107.681 1283 1798 3236.15 1309.681 63.0722 40.3751 0.9424734 1.060673 -0.08547615 0.08497939
12 6663.27 3060.022 1275 1822 5388.27 1238.022 82.061 29.84452 1.660072 0.602176 0.7312461 -0.7317429
13 5640.32 3483.86 1271 1822 4369.32 1661.861 54.9699 35.3584 1.002823 0.9968414 0.004067313 -0.004564072
14 5521.84 3517.45 1262.5 1799 4259.34 1718.455 90.7433 49.0113 0.9453877 1.057403 -0.08102202 0.08052526
15 5627.02 3298.31 1270.5 1799.5 4356.52 1498.805 108.1607 62.5701 1.108665 0.9016754 0.1488232 -0.1493199
16 5881.74 3626.4 1298 1808 4583.74 1818.4 78.5628 63.5449 0.961472 1.039714 -0.05668329 0.05618653
17 5418.62 3168.15 1292 1822 4126.62 1346.147 76.667 41.7367 1.16925 0.8549543 0.225584 -0.2260808
18 3993.35 2792.87 1291 1813 2702.348 979.87 54.1684 29.28618 1.05191 0.9503244 0.07301129 -0.07350805
19 4164.97 2777.011 1311 1818 2853.967 959.011 39.0105 24.41589 1.135091 0.8806831 0.1828084 -0.1833052
20 4550.27 2658.848 1315.5 1821.5 3234.77 837.348 39.0059 22.58948 1.473477 0.6784332 0.5592245 -0.5597212

Total number of rows: 53856

Table truncated, full table size 5588 Kbytes.




Supplementary data files not provided

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