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Sample GSM6338188 Query DataSets for GSM6338188
Status Public on Feb 08, 2023
Title era_N0_3
Sample type SRA
Source name era_N0_3
Organism Arabidopsis thaliana
Characteristics genotype: era1 - mutant=knock-out,insertional mutagen,T-DNA-AT5G66470
developmental stage: boyes: 5.10
tissue: rosette
Treatment protocol N0-abiotic stress-nitrogen-nitrate nutritionquantity 0mM
Growth protocol Media=poting soil,Hygrometry 50%,24 day and 19°C night, 100 µmol.m-2.s-1 Light
Extracted molecule total RNA
Extraction protocol era_N0_3(100mg)
rna_selection:selection polyA(3'seq), single, stranded:yes, Protocol:PT_QuantSEQ-3_prime_mRNA_simple_indexage_B_17-11-21.docx
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
Data processing Genome_build: genome of Ath TAIR10
genome mapping and counts of reads by gene locus are done with Tophat2/HTSeqcount; exact multihits are removed and count only consistent PE reads (in PE case).
Supplementary_files_format_and_content: type:count file (txt); content:GeneID,counts
Submission date Jul 13, 2022
Last update date Feb 08, 2023
Contact name Véronique BRUNAUD
Organization name INRA - CNRS - UPSUD
Lab IPS2
Street address rue Noetzlin
City Gif-sur-Yvette
ZIP/Postal code 91190
Country France
Platform ID GPL19580
Series (1)
GSE208151 Protein farnesylation is involved in the adaptation of Arabidopsis to nitrogen starvation
BioSample SAMN29720026
SRA SRX16203558

Supplementary file Size Download File type/resource
GSM6338188_htseqcount_era_N0_3.txt.gz 116.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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