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Sample GSM6338194 Query DataSets for GSM6338194
Status Public on Feb 08, 2023
Title era_N2_3
Sample type SRA
 
Source name era_N2_3
Organism Arabidopsis thaliana
Characteristics genotype: era1 - mutant=knock-out,insertional mutagen,T-DNA-AT5G66470
developmental stage: boyes: 5.10
tissue: rosette
Treatment protocol N2-abiotic stress-nitrogen-nitrate nutritionquantity 2mM
Growth protocol Media=poting soil,Hygrometry 50%,24 day and 19°C night, 100 µmol.m-2.s-1 Light
Extracted molecule total RNA
Extraction protocol era_N2_3(100mg)
rna_selection:selection polyA(3'seq), single, stranded:yes, Protocol:PT_QuantSEQ-3_prime_mRNA_simple_indexage_B_17-11-21.docx
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Data processing Genome_build: genome of Ath TAIR10
genome mapping and counts of reads by gene locus are done with Tophat2/HTSeqcount; exact multihits are removed and count only consistent PE reads (in PE case).
Supplementary_files_format_and_content: type:count file (txt); content:GeneID,counts
 
Submission date Jul 13, 2022
Last update date Feb 08, 2023
Contact name Véronique BRUNAUD
E-mail(s) veronique.brunaud@inrae.fr
Organization name INRA - CNRS - UPSUD
Lab IPS2
Street address rue Noetzlin
City Gif-sur-Yvette
ZIP/Postal code 91190
Country France
 
Platform ID GPL19580
Series (1)
GSE208151 Protein farnesylation is involved in the adaptation of Arabidopsis to nitrogen starvation
Relations
BioSample SAMN29720020
SRA SRX16203564

Supplementary file Size Download File type/resource
GSM6338194_htseqcount_era_N2_3.txt.gz 116.6 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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